HumanCellAtlas/matrix-service

Issues

• isoform expression analysis

  #634 opened 2 years ago by gadepallivs
  0

• Test [please ignore]

  #440 opened 4 years ago by brianraymor
  0

• Update ETL to support Optimus v1.4.0

  #433 opened 5 years ago by calvinnhieu
  0

• Can't download matrix for the Organoids dataset

  #431 opened 5 years ago by zperova
  0

• Include specimen_from_organism disease fields in filters and fields endpoints

  #430 opened 5 years ago by calvinnhieu
  0

• Update `aws_disposition` values from `blessed` to `standard`

  #429 opened 5 years ago by calvinnhieu
  0

• Run Matrix Service for scRNAseqSystemicComparison

  #427 opened 5 years ago by jychien
  3

• Write cell ids into barcodes.tsv in the mtx output

  #428 opened 5 years ago by mckinsel
  2

• Fix Batch concurrency bug when c > 5

  #417 opened 5 years ago by calvinnhieu
  0

• Automate generation of Data Browser downloadable per-project matrix service output files

  #352 opened 5 years ago by theathorn
  2

• Parse species from DB manifest in v0

  #407 opened 5 years ago by calvinnhieu
  0

• Run Matrix Service for TissueStability

  #426 opened 5 years ago by jychien
  0

• Run Matrix Service for Reprogrammed_Dendritic_Cells

  #396 opened 5 years ago by jychien
  13

• Run Matrix Service for KidneySingleCellAtlas

  #414 opened 5 years ago by jychien
  0

• Finalize mtx format

  #425 opened 5 years ago by calvinnhieu
  0

• Remove matrix for spatio-temporal kidney project

  #411 opened 5 years ago by jahilton
  3

• Migrate specimen table to cell suspension table

  #405 opened 5 years ago by calvinnhieu
  0

• [non-breaking] Updates to Optimus Outputs

  #377 opened 5 years ago by kbergin
  2

• Refactor transformer logic to be 1 per table

  #420 opened 5 years ago by calvinnhieu
  0

• Remove special case in specimen_library.resolve_ontology_ols

  #419 opened 5 years ago by calvinnhieu
  0

• Investigate intermittent GET /matrix 504s during functional tests

  #415 opened 5 years ago by calvinnhieu
  0

• Refactor DSS /search -> Query Service

  #412 opened 5 years ago by calvinnhieu
  0

• Modify queries in v0 to use bundle uuid instead of bundle fqid

  #406 opened 5 years ago by calvinnhieu
  0

• Unable to generate client for java via swagger-codegen

  #366 opened 5 years ago by heuermh
  7

• `total_umis` is a categorical variable in the loom output

  #363 opened 5 years ago by mckinsel
  1

• 1-pager design of Automation of Project Matrices

  #403 opened 5 years ago by calvinnhieu
  0

• Change human gencode annotation

  #384 opened 5 years ago by mckinsel
  1

• How to determine expected metadata content in Matrix Service loom files

  #381 opened 5 years ago by jlchang
  2

• Document how users can join rows in manifest, matrix and metadata.tsv

  #400 opened 5 years ago by brianraymor
  0

• Capture Code Coverage Metrics

  #365 opened 5 years ago by rhiananthony
  1

• Run Matrix Service for SingleCellLiverLandscape

  #397 opened 5 years ago by jychien
  2

• Re-enable matrix service in dcp-wide integration tests

  #372 opened 5 years ago by calvinnhieu
  4

• Generate per-project matrix service output files in Data Browser S3 bucket

  #351 opened 5 years ago by theathorn
  6

• Assessing the relevance of organoids to model inter-individual variation is missing loom download

  #390 opened 5 years ago by brianraymor
  0

• Census of Immune Cells is missing loom and csv downloads

  #391 opened 5 years ago by brianraymor
  0

• Process Barcelona Data Sets

  #393 opened 5 years ago by brianraymor
  0

• Remediate High vulnerability

  #388 opened 5 years ago by Lilalamar
  1

• Refining the threshold for total_umis

  #360 opened 5 years ago by brianraymor
  0

• Move DynamoDB to On-Demand billing

  #385 opened 5 years ago by calvinnhieu
  0

• Replacing ! with / in Zarr outputs

  #383 opened 5 years ago by kbergin
  2

• Handle batch job ids that expire

  #364 opened 5 years ago by mckinsel
  1

• Implement cache invalidation tool

  #345 opened 5 years ago by calvinnhieu
  0

• Caching

  #346 opened 5 years ago by calvinnhieu
  0

• Investigate data version definition

  #350 opened 5 years ago by calvinnhieu
  3

• Add expiration policy to results bucket

  #343 opened 5 years ago by calvinnhieu
  1

• Implement caching layer

  #342 opened 5 years ago by calvinnhieu
  1

• Update subscription to DSS to only receive data adhering to compatible schemas

  #341 opened 5 years ago by maniarathi
  0

• Update data version on loader success

  #347 opened 5 years ago by calvinnhieu
  0

• Matrix service grafana dashboard is not in sync with v1

  #358 opened 5 years ago by parthshahva
  0

• Define data version per environment

  #344 opened 5 years ago by calvinnhieu
  2