Issues
- 0
- 0
PEtab pipeline: Only compute sensitivities with respect to optimized parameters
#380 opened by dweindl - 2
Interfacing CeSS
#273 opened by paulflang - 0
Add singularity definition file
#277 opened by dweindl - 2
Update master branch of GoogleTestSuite to main
#367 opened by MerktSimon - 0
KeyError: 'observableParameters'
#365 opened by dweindl - 1
Update python hdf5 to PEtab conversion
#223 opened by MerktSimon - 0
- 3
- 0
More informative output for hierarchical optimization
#210 opened by dweindl - 1
Update PEtab
#211 opened by dweindl - 0
generateHDF5DataFileFromText.py takes ages
#219 opened by dweindl - 2
Document mini-batch optimizer settings
#218 opened by dweindl - 1
- 0
Option to specify maximum number of threads
#359 opened by dweindl - 0
Converting result files to pypesto format
#349 opened by dweindl - 0
Make HDF5 output more configurable
#348 opened by dweindl - 0
Support for forward sensitivities
#343 opened by dweindl - 0
Update to most recent Ipopt version
#214 opened by dweindl - 0
sphinx doc: split up python and c++
#250 opened by dweindl - 0
Update AMICI to 0.11.8
#298 opened by dweindl - 0
Implement PEtab-based state reinitialization
#324 opened by dweindl - 2
Error during HDF5 file generation with preequilibration and species in condition table
#300 opened by LeonardSchmiester - 1
update snakemake workflow for PEtab files
#235 opened by dweindl - 0
Implement PEtab/PySB import
#325 opened by dweindl - 0
gradient check CLI: allow specifying parameter index/ID
#319 opened by dweindl - 1
- 6
Make Amici not return memory-intensive quantities
#242 opened by paulstapor - 0
- 0
Fix warning icpc: command line warning #10121: overriding '-xHOST' with '-march=native'
#220 opened by dweindl - 0
add script / cmake target to update amici
#288 opened by dweindl - 8
- 2
Installation: CMake error
#247 opened by paulflang - 1
Verify optimal values reported by ipopt
#221 opened by dweindl - 0
CI: extend benchmark collection tests to optimize, not only simulate with known parameters
#284 opened by dweindl - 1
L1/elastic net regularisation
#274 opened by paulflang - 2
Update documentation
#232 opened by LeonardSchmiester - 0
Run petab test suite
#241 opened by dweindl - 0
- 1
- 0
Add gradient check for PEtab test suite models
#245 opened by dweindl - 0
Add --mpi option
#216 opened by dweindl - 0
Add option to disable integration tolerance relaxation upon intergration errors
#224 opened by dweindl - 0
- 0
- 0
Use docker credential helper in deploy action
#217 opened by dweindl - 0
Disentangle parallel AMICI output
#202 opened by dweindl - 0
Cleanup and document python library
#213 opened by dweindl - 3
Deal with stale branches
#200 opened by dweindl - 1
Prepare release v0.4.0
#198 opened by dweindl