petab

There are 10 repositories under petab topic.

AMICI-dev/AMICI
Advanced Multilanguage Interface to CVODES and IDAS
Language:Jupyter Notebook108 12 94930
Benchmarking-Initiative/Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
Language:Python28 14 11514
ICB-DCM/parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Language:C++19 7 2004
PEtab-dev/libpetab-python
Python package for working with PEtab files
Language:Python14 9 916
yaml2sbml-dev/yaml2sbml
Tool to convert an ODE model specified in the YAML format to SBML.
Language:Python12 4 667
PEtab-dev/petabvis
PEtab visualization tool
Language:Python7 4 50
PEtab-dev/petab_test_suite
PEtab test suite
Language:Python6 6 332
copasi/python-petab-importer
PEtab --> COPASI importer
Language:Python3 7 20
kmaeda16/RCGAToolbox
RCGAToolbox is a MATLAB toolbox for parameter estimation of kinetic models.
Language:MATLAB3 0 01
fbergmann/pyabc-copasi
Example Scripts for using COPASI simulations in pyABC
Language:Python2 0