petab

There are 11 repositories under petab topic.

AMICI-dev/AMICI
Advanced Multilanguage Interface to CVODES and IDAS
Language:Jupyter Notebook114 10 98931
Benchmarking-Initiative/Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
Language:Python29 13 12418
ICB-DCM/parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Language:C++21 6 2044
PEtab-dev/libpetab-python
Python package for working with PEtab files
Language:Python14 8 1027
PEtab-dev/petab_select
Model selection for PEtab
Language:Python12 5 431
yaml2sbml-dev/yaml2sbml
Tool to convert an ODE model specified in the YAML format to SBML.
Language:Python12 3 667
PEtab-dev/petabvis
PEtab visualization tool
Language:Python7 3 50
PEtab-dev/petab_test_suite
PEtab test suite
Language:Python6 5 343
copasi/python-petab-importer
PEtab --> COPASI importer
Language:Python3 6 21
kmaeda16/RCGAToolbox
RCGAToolbox is a MATLAB toolbox for parameter estimation of kinetic models.
Language:MATLAB3 0 01
fbergmann/pyabc-copasi
Example Scripts for using COPASI simulations in pyABC
Language:Python2 0