AMICI-dev/AMICI

Issues

• CMake Error during AMICI installation on WSL

  #2467 opened 2 days ago by LarkinIt
  0

• 'reduce' is not a member of 'std' std::reduce(idlist.begin(), idlist.end())

  #2463 opened 3 days ago by derleanfv
  1

• Replace deprecated `petab.Problem.from_files` in `amici.petab.cli.import_petab._main`

  #2460 opened 11 days ago by dweindl
  0

• Handle reserved names in PEtab parameter mapping

  #2461 opened 10 days ago by dweindl
  3

• Option to disable event-handling

  #2386 opened 3 months ago by dweindl
  2

• Check numpy>=2 compatibility

  #2377 opened 11 days ago by dweindl
  4

• PEtab import: Estimated initial conditions specified via the conditions table aren't handled correctly

  #2455 opened 11 days ago by dweindl
  0

• Remove deprecated functionality for PEtab import from individual files instead of petab.Problem

  #2458 opened 11 days ago by dweindl
  0

• Piecewise function

  #2454 opened 23 days ago by aidinbii
  1

• Not installing on Mac M1

  #2432 opened a month ago by MadNietzsche
  4

• Compilation fails with Intel OneApi MKL 2024.1

  #2441 opened a month ago by kaiserls
  2

• cmake: replace explicit checks for CMAKE_BUILD_TYPE

  #2447 opened a month ago by dweindl
  0

• IMPORTED_LOCATION not set for imported target "Upstream::amici"

  #2442 opened a month ago by dweindl
  1

• `Benchmark Collection` workflow fails for Lang_PLOSComputBiol2024

  #2444 opened a month ago by dweindl
  2

• TimeCourse Implementation

  #2450 opened a month ago by FFroehlich
  0

• Docker release images are no longer published

  #2383 opened 2 months ago by FFroehlich
  2

• Support event-assignments to compartments

  #2424 opened 2 months ago by dweindl
  0

• Incorrect handling of event assignments to compartments

  #2426 opened 2 months ago by dweindl
  0

• SBML import ignores `useValuesFromTriggerTime` attribute on events

  #2427 opened 2 months ago by dweindl
  0

• Remove wurlitzer dependency

  #2409 opened 2 months ago by dweindl
  0

• macos-latest tests failing since last night

  #2415 opened 2 months ago by dweindl
  1

• zip(... , strict=True)

  #2410 opened 2 months ago by dweindl
  0

• Get rid of amici.swig_wrappers.ExpData

  #2380 opened 2 months ago by dweindl
  0

• Execution of multiple event assignments from the same event

  #2430 opened 2 months ago by dweindl
  3

• InitialAssignment issue

  #2418 opened 2 months ago by aidinbii
  6

• Allow subselection of state variables for steady-state simulations

  #2368 opened 2 months ago by dweindl
  0

• cmake: set sundials path hint for python package

  #2394 opened 2 months ago by dweindl
  0

• Model::checkFinite - exclude timepoints

  #2370 opened 2 months ago by dweindl
  0

• SetuptoolsDeprecationWarning: Customization incompatible with editable install

  #2407 opened 2 months ago by dweindl
  1

• Remove autodoc hooks for signature/docstring processing

  #2399 opened 2 months ago by dweindl
  0

• sphinx fails with AttributeError: module 'sphinx.domains.cpp' has no attribute 'ASTParametersQualifiers'

  #2403 opened 2 months ago by dweindl
  0

• Combine `get_{expressions,observables,states,...}_as_dataframe`?

  #2393 opened 3 months ago by dweindl
  1

• Allow setting integration tolerances per state variable

  #2384 opened 3 months ago by dweindl
  0

• slim down docker file

  #2385 opened 3 months ago by FFroehlich
  3

• GHA: cache remote test files in remaining workflows

  #2378 opened 3 months ago by dweindl
  0

• suitesparse linking

  #2374 opened 4 months ago by dweindl
  0

• CMake: set proper *_ROOT or CMAKE_MODULE_PATH for finding vendored libraries

  #2373 opened 4 months ago by dweindl
  0

• Handling (non-negativity) constraints

  #2327 opened 4 months ago by dweindl
  3

• Fix buildAmici.sh & installAmiciSource.sh to work with system-python

  #2355 opened 4 months ago by dweindl
  0

• Doc: Fix title in ExampleJax

  #2369 opened 4 months ago by dweindl
  0

• ReturnData::J

  #2334 opened 4 months ago by dweindl
  0

• Enable specifying maximum solver step size

  #2358 opened 4 months ago by dweindl
  0

• Fix type annotations in swig-wrapper

  #2336 opened 4 months ago by dweindl
  0

• CMake: fix blas linking

  #2354 opened 4 months ago by dweindl
  0

• Always include timepoints in NaN/Inf warnings

  #2328 opened 4 months ago by dweindl
  0

• ReturnDataView AttributeError: messages

  #2331 opened 4 months ago by dweindl
  0

• Allow setting MaxConvFails

  #2333 opened 4 months ago by dweindl
  0

• Doc: Add example for Solver.setContstraints and Model.setStateIsNonNegative

  #2367 opened 4 months ago by dweindl
  0

• ReturnData: remove protected data members

  #2348 opened 4 months ago by dweindl
  0

• Handling conservation laws via solver constraints

  #2329 opened 4 months ago by dweindl
  3