pysb

There are 8 repositories under pysb topic.

  • sorgerlab/indra

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

    Language:Python1752346066
  • AMICI

    AMICI-dev/AMICI

    Advanced Multilanguage Interface to CVODES and IDAS

    Language:Jupyter Notebook1081294930

  • LoLab-MSM/pyvipr

    Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML

    Language:Jupyter Notebook277264

  • blakeaw/GAlibrate

    Parameter estimation and model calibration using Genetic Algorithm optimization in Python.

    Language:Jupyter Notebook10363

  • LoLab-MSM/pydyno

    Tool that uses tropical algebra concepts to 'decompose' species trajectories in the protein-protein interactions that drive changes of concentration in time

    Language:Jupyter Notebook81671

  • Borealis-BioModeling/pysb-units

    PySB add-on providing utilities to add units to models and perform dimensional analysis.

    Language:Python1030

  • MurdoChiknas/mTOR_PySB

    Simplified model of mTOR written using PySB. mTOR is modeled such that its activation is due to insulin receptor activation, and inhibited by binding of rapamycin-FKBP complex.

    Language:Python1100

  • NTBEL/PARM

    PAR2 Activation and calcium signaling Reaction Model in PySB

    Language:Python0100