yaml2sbml-dev/yaml2sbml

Issues

• Initial assignment feature

  #145 opened 9 months ago by aidinbii
  1

• Make ODE specification optional

  #142 opened 2 years ago by shoepfl
  2

• Error in creation of PEtab tables for the model

  #138 opened 2 years ago by aidinbii
  10

• Use petablinter in example notebooks to demonstrate that the output is valid PEtab

  #106 opened 3 years ago by yannikschaelte
  3

• Ensure data types in Model Editor

  #100 opened 3 years ago by jvanhoefer
  3

• Reviewer comments for JOSS submisson

  #125 opened 4 years ago by AoifeHughes
  4

• Zenodo badge

  #132 opened 4 years ago by jvanhoefer
  0

• Reviewer 2 comments for JOSS submission

  #127 opened 4 years ago by marouenbg
  3

• Events in yaml2sbml

  #124 opened 4 years ago by jvanhoefer
  0

• update readme

  #43 opened 4 years ago by jvanhoefer
  1

• option to have observables as assignments in yaml2sbml call

  #98 opened 4 years ago by jvanhoefer
  1

• Remove Codacy again?

  #65 opened 4 years ago by jvanhoefer
  3

• add Windows

  #41 opened 4 years ago by jvanhoefer
  1

• Tidy up outputs of notebooks

  #89 opened 4 years ago by yannikschaelte
  5

• Logo

  #69 opened 4 years ago by yannikschaelte
  19

• Format validation broken in Lotka Volterra jupyter notebook

  #114 opened 4 years ago by jvanhoefer
  1

• Notebooks fail

  #90 opened 4 years ago by yannikschaelte
  4

• Add logo license

  #108 opened 4 years ago by yannikschaelte
  0

• Issues when state variable begins with a number

  #107 opened 4 years ago by NicholasCowie
  3

• unify requirements.txt and setup.py

  #72 opened 4 years ago by jvanhoefer
  2

• Documentation on readthedocs

  #60 opened 4 years ago by yannikschaelte
  5

• Tidy up Docs/Deploy

  #77 opened 4 years ago by jvanhoefer
  6

• Add issue template

  #92 opened 4 years ago by yannikschaelte
  1

• Sphinx plugins

  #93 opened 4 years ago by yannikschaelte
  1

• validation error for formulas starting with minus

  #99 opened 4 years ago by jvanhoefer
  2

• Definition of Model ID for use with pyPESTO and AMICI

  #101 opened 4 years ago by elbaraim
  3

• Logo not rendering on README

  #102 opened 4 years ago by martamatos
  4

• Rename master -> main?

  #86 opened 4 years ago by yannikschaelte
  3

• Logo background

  #84 opened 4 years ago by jvanhoefer
  5

• Enforce linear history in develop?

  #83 opened 4 years ago by yannikschaelte
  6

• deploy to pypi

  #59 opened 4 years ago by jvanhoefer
  3

• set long_description in setup.py

  #78 opened 4 years ago by jvanhoefer
  1

• YamlModel.load_from_yaml loads model, leads to inconsistent YamlModel

  #61 opened 4 years ago by jvanhoefer
  1

• rename over_write to overwrite

  #66 opened 4 years ago by jvanhoefer
  1

• __version__

  #56 opened 4 years ago by jvanhoefer
  0

• Example Notebook(s) for the model editor

  #58 opened 4 years ago by jvanhoefer
  0

• Get master/develop branch hierarchy for development

  #62 opened 4 years ago by jvanhoefer
  1

• Add Notebooks to test

  #34 opened 4 years ago by jvanhoefer
  7

• Move tests to github actions

  #53 opened 4 years ago by yannikschaelte
  6

• Add yaml validation to examples

  #51 opened 4 years ago by jvanhoefer
  0

• add CLI for validate_yaml

  #42 opened 4 years ago by jvanhoefer
  0

• suppress warnings regarding SBML creation when calling yaml2sbml

  #49 opened 4 years ago by jvanhoefer
  0

• improve readability of model editor output

  #44 opened 4 years ago by jvanhoefer
  1

• Move examples from examples repo to here

  #33 opened 4 years ago by jvanhoefer
  4

• Error in time variable specification with YamlModel

  #38 opened 4 years ago by dilpath
  1

• model.validat_model() does not catch inconsistent time variable definition

  #39 opened 4 years ago by jvanhoefer
  0

• Add functionality to create/edit yaml model

  #35 opened 4 years ago by jvanhoefer
  0

• Clear separation between public and private API

  #31 opened 4 years ago by jvanhoefer
  0

• validate PEtab:

  #25 opened 4 years ago by jvanhoefer
  1

• travis, coveralls, and codacy links are broken

  #28 opened 4 years ago by martamatos
  0