yannikschaelte
Modeling+AI | Developer | Researcher
Uni Bonn + Helmholtz Munich + TUMLittle blue planet
Pinned Repositories
AMICI
Advanced Multilanguage Interface to CVODES and IDAS
pyABC
distributed, likelihood-free inference
pyPESTO
python Parameter EStimation TOolbox
PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
dfba_tests
jabbar
Just Another Beautiful progress BAR
MiniPlaner
Software zum automatischen Erstellen von Messdienerplänen.
pres_phd_defense_20220601
Slides of my PhD defense on 2022-06-01
Study-ABC-Noise
A study of the use of noise models in ABC
tex2svg
Convert latex to svg
yannikschaelte's Repositories
yannikschaelte/tex2svg
Convert latex to svg
yannikschaelte/jabbar
Just Another Beautiful progress BAR
yannikschaelte/MiniPlaner
Software zum automatischen Erstellen von Messdienerplänen.
yannikschaelte/pres_phd_defense_20220601
Slides of my PhD defense on 2022-06-01
yannikschaelte/dfba_tests
yannikschaelte/pres_ismb2020
Slides for a presentation at ISMB 2020
yannikschaelte/AMICI
Advanced Multilanguage Interface to CVODES and IDAS
yannikschaelte/BayesFlow
A Python library for amortized Bayesian workflows using generative neural networks.
yannikschaelte/cookies
Useful code and templates
yannikschaelte/Div
Temporary stuff from diverse projects.
yannikschaelte/oxml_carcinoma_classification
OxML 2023 Carcinoma classification challenge
yannikschaelte/petab_test_suite
PEtab test suite
yannikschaelte/pres_abc_noise_bonn2020
Presentation about Noise assessment in ABC at a FitMultiCell consortium meeting 2020
yannikschaelte/pres_astrazeneca_journalclub_2023
Slides for a journal club at AstraZeneca Computational Pathology, 2023-05-16
yannikschaelte/pres_bayescomp_2023
Slides for my presentation at the BayesComp conference, Levi, Finland 2023
yannikschaelte/pres_comphealth2021
Presentation at the Helmholtz Munich Computational Health Group Day 2021-09-30
yannikschaelte/pres_fmc2021
Presentation at the FitMultiCell consortium meeting 2021-10-07
yannikschaelte/pres_mathlifesci_bonn_2023
Presentation at the Bonn Mathematical Life Sciences Conference, April 17-20 2023
yannikschaelte/pres_missingdata_emune_heidelberg_2023
Presentation on "Missing data in amortized simulation-based neural posterior estimation", EMUNE consortium meeting, Heidelberg 2023-01-16
yannikschaelte/pres_npe_jhs_2023
Presentation for the Joachim Herz Stiftung Kick-Off Meeting, Hamburg 2023-02-11
yannikschaelte/pres_ose2020
Presentation for the OpenSourceEconomics seminar November 2020
yannikschaelte/pres_ose2021
Guest lecture for the OpenSourceEconomics Scientific Computing lecture series, January 2021
yannikschaelte/pres_pyabc_inverse_2022
Presentation on pyABC at the Inverse Problems summer school, Bonn 2022-08-22
yannikschaelte/scvelo
RNA Velocity generalized through dynamical modeling
yannikschaelte/simulator
Simulator for the spatiotemporal model for Covid-19
yannikschaelte/SSA
Stochastic Simulation Algorithms.
yannikschaelte/study_abc_rad
Study on robust adaptive distances in ABC
yannikschaelte/study_abc_slad
Study on ABC semi-automatic summary statistic learning and adaptive distance
yannikschaelte/yaml2sbml
Little tool to convert an ODE model specified in .yaml format to .sbml
yannikschaelte/yannikschaelte.github.io