yannikschaelte

yannikschaelte's Stars

• arrjon/Amortized-NLME-Models

  Applying amortizing neural posterior estimation for non-linear mixed effects models

  Language:Jupyter Notebook8

• zdhNarsil/Awesome-GFlowNets

  A curated list of resources about generative flow networks (GFlowNets).

  44732

• ICB-DCM/MEMOIR

  MATLAB toolbox for Mixed Effect Model InfeRence

  Language:MATLAB21

• GFNOrg/gflownet

  Generative Flow Networks

  Language:Python62477

• sbi-dev/sbi

  Simulation-based inference toolkit

  Language:Python639160

• bayesflow-org/bayesflow

  A Python library for amortized Bayesian workflows using generative neural networks.

  Language:Python43459

• ICB-DCM/pyABC

  distributed, likelihood-free inference

  Language:Python20844

• paulflang/SBML2Julia

  A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.

  Language:Python51

• PEtab-dev/petab_select

  Model selection for PEtab

  Language:Python121

• FluxML/Flux.jl

  Relax! Flux is the ML library that doesn't make you tensor

  Language:Julia4.6k613

• FluxML/Zygote.jl

  21st century AD

  Language:Julia1.5k212

• koco19/epi2

  Code for the epidemiological analysis of KoCo19 round 2

  Language:HTML21

• mame/quine-relay

  An uroboros program with 100+ programming languages

  Language:Ruby14.1k559

• PEtab-dev/libpetab-python

  Python package for working with PEtab files

  Language:Python147

• yannikschaelte/dfba_tests

  Language:Python2

• ICB-DCM/lookahead-study

  Code for the pyABC dynamic look-ahead scheduling study

  Language:Jupyter Notebook3

• koco19/lab_epi

  Laboratory and epidemiological analysis for the initial examination of KoCo19

  Language:HTML22

• ICB-DCM/solverstudy

  Language:Python1

• yannikschaelte/jabbar

  Just Another Beautiful progress BAR

  Language:Python7

• yaml2sbml-dev/yaml2sbml

  Tool to convert an ODE model specified in the YAML format to SBML.

  Language:Python127

• pykeen/pykeen

  🤖 A Python library for learning and evaluating knowledge graph embeddings

  Language:Python1.8k195

• covid19-model/simulator

  Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022

  Language:Python7433

• CSSEGISandData/COVID-19

  Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

  29.1k18.3k

• Benchmarking-Initiative/Benchmark-Models-PEtab

  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling

  Language:Python2918

• PEtab-dev/petab_web_validator

  PEtab validation web service

  Language:Python3

• PEtab-dev/petab_test_suite

  PEtab test suite

  Language:Python63

• yannikschaelte/tex2svg

  Convert latex to svg

  Language:TeX101

• yannikschaelte/Study-ABC-Noise

  A study of the use of noise models in ABC

  Language:Jupyter Notebook2

• ICB-DCM/parPE

  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

  Language:C++214

• yannikschaelte/MiniPlaner

  Software zum automatischen Erstellen von Messdienerplänen.

  Language:C++52