IVANDOMENZAIN's Stars
opencobra/cobratoolbox
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
opencobra/memote
memote – the genome-scale metabolic model test suite
SysBioChalmers/Human-GEM
The generic genome-scale metabolic model of Homo sapiens
SysBioChalmers/GECKO
Toolbox for including enzyme constraints on a genome-scale model.
arendsee/phylostratr
An R framework for phylostratigraphy
biosustain/Maud
Enzyme models that take into account kinetics, allostery and thermodynamics
maranasgroup/CatPred
Machine Learning models for in vitro enzyme kinetic parameter prediction
SysBioChalmers/ecModels
A container for all enzyme constrained models created by GECKO.
EPFL-LCSB/matTFA
A Matlab implementation of Thermodynamics-based Flux Analysis
arendma/Crekapp
Proteomics and constraint-based modelling reveal enzyme kinetic properties of C. reinhardtii on a genome-scale
EngqvistLab/orgtools
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
IVANDOMENZAIN/diverseYeasts_metabolism
Polster-lab/deeplearning-models
A collection of various deep learning architectures, models, and tips