Illumina/BeadArrayFiles

Issues

• Comparing Infinium Control probes with GenomeStudio

  #43 opened a month ago by fkokocinski
  3

• genotype call for probe

  #42 opened 3 months ago by cmccabe0728
  1

• python3 support

  #40 opened 5 months ago by cmccabe0728
  3

• locus_summary.py output

  #41 opened 5 months ago by cmccabe0728
  0

• Error: Exception: GTC file is incomplete

  #27 opened 4 years ago by YHWen-bio
  8

• Exception: Data block version in cluster file 7 not supported

  #34 opened 2 years ago by brettva
  3

• LocusAggregate.aggregate_samples only populates first LocusAggregate

  #31 opened 2 years ago by daveware-nv
  2

• GTC file version 3 can't output B allele frequencies and logr

  #20 opened 5 years ago by Liiiii2101
  8

• gtc to plink ped format - 0|G instead of A|G

  #30 opened 3 years ago by 1teaspoon
  1

• Obtaining GC and GT scores as columns in gtc_final_report.py

  #29 opened 3 years ago by evilvenom
  1

• Error from a call to a function from IlluminaBeadArrayFiles

  #16 opened 6 years ago by mirrorlake999
  7

• Error on calling TOP_strand genotypes

  #28 opened 3 years ago by zihhuafang
  2

• Gentrain score in ClusterFile.py

  #26 opened 4 years ago by Derrup
  1

• Need further clarifications on the return values of GenotypeCalls.py module

  #21 opened 5 years ago by plusmid
  3

• Add unit tests

  #23 opened 4 years ago by jjzieve
  0

• Toggle to remove loci that have been zeroed out in cluster file from DNA summary report

  #22 opened 4 years ago by jjzieve
  0

• File specification for cluster files

  #19 opened 5 years ago by brettvanderwerff
  0

• Small difference observed in the normalized X and Y signals between GenomeStudio vs Illumina:BeadArrayFiles

  #14 opened 6 years ago by Gerbenvandervries
  5

• Illumina strand from manifest

  #15 opened 6 years ago by kaylahardwick
  2

• gtc_final_report.py

  #11 opened 7 years ago by smuchakiel
  7

• Determining log r ratio and b allele frequency

  #2 opened 8 years ago by palijmath
  1

• Weird Basecall result

  #1 opened 8 years ago by yyna
  1