JaerongA

Data Scientist & Engineer | computational neuroscience

UT HealthHouston

Pinned Repositories

element-array-ephys
DataJoint Element for Neuropixels analysis with Kilosort
Language:Python5 13 5334
workflow-array-ephys
Example DataJoint workflow for Neuropixels analysis with Kilosort
Language:Jupyter Notebook9 11 2523
aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for file io, data querying and qc.
Language:Python1 0 00
bctpy
brain connectivity toolbox for python
Language:Python1 0 00
BioSPPy
Biosignal Processing in Python
Language:Python10
monkey-dj
firefly-monkey datajoint schema
Language:Jupyter Notebook1 0 00
pyfinch
Python package for analyzing avian neural & bioacoustics signals
Language:Python73
syllable_network_analysis
Analyze birdsong syllable sequence
Language:Jupyter Notebook1 1 00
syllable_similarity
Analyze spectral similarity between song syllables
Language:Jupyter Notebook00
aeon_mecha
Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
Language:Python4 10 1666

JaerongA's Repositories

JaerongA/monkey-dj
firefly-monkey datajoint schema
Language:Jupyter Notebook1 0 00
JaerongA/abcd-hcp-pipeline
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
JaerongA/best-of-ml-python
🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.
JaerongA/bids-specification
Brain Imaging Data Structure (BIDS) Specification
JaerongA/birdsonganalysis
Python library to make bird song analysis, usually made with Sound Analysis Pro
JaerongA/brainreg
Automated 3D brain registration with support for multiple species and atlases.
Language:Python0 0
JaerongA/brainstorm3
Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology
JaerongA/Case-Studies-Python
An introduction to the practicing neuroscientist to data analysis in Python
JaerongA/datajoint-tutorials
Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
Language:Jupyter Notebook0 0
JaerongA/datajoint-utilities
A general purpose repository containing all generic tools/utilities surrounding the DataJoint ecosystem. These can be candidates for DataJoint plugins
Language:Python
JaerongA/ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
JaerongA/element-animal
DataJoint Element for Animal Management - NIH U24
Language:Python
JaerongA/element-calcium-imaging
DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p
Language:Python
JaerongA/element-deeplabcut
DataJoint Element for behavioral analysis with DeepLabCut
Language:Python
JaerongA/element-electrode-localization
DataJoint Element for localizing Neuropixels electrodes
JaerongA/element-facemap
DataJoint Element for behavioral analysis with Facemap
JaerongA/element-lab
DataJoint Element for Lab Management - NIH U24
Language:Python
JaerongA/element-optogenetics
DataJoint Element for optogenetic experiments
JaerongA/IBL-pipeline
DataJoint pipeline for IBL project
JaerongA/ibllib
IBL core shared libraries
JaerongA/intanrhsreader
Python reader for .rhs data files
Language:Python
JaerongA/map-ephys
Mesoscale activity ephys ingest schema
JaerongA/neurocaas
IaC codebase for the NeuroCAAS Platform
JaerongA/neuropixel-utils
Utilities for managing Neuropixel datasets and Kilosort results
JaerongA/nipype
Workflows and interfaces for neuroimaging packages
JaerongA/pynwb
A Python API for working with Neurodata stored in the NWB Format
JaerongA/qsiprep
Preprocessing and reconstruction of diffusion MRI
JaerongA/sci-viz
Generic visualization framework for building dashboarding capabilities for DataJoint pipelines.
JaerongA/sleap
A deep learning framework for multi-animal pose tracking.
JaerongA/the-algorithm-ml
Source code for Twitter's Recommendation Algorithm