JudeWells

PhD student at University College London: machine learning for drug discovery, MSc degrees in Data Science + Applied Statistics.

London

Pinned Repositories

chainsaw
Language:Python28 5 172
keras_anomaly_detection
CNN based autoencoder combined with kernel density estimation for colour image anomaly detection / novelty detection. Built using Tensforflow 2.0 and Keras
Language:Jupyter Notebook35 2 322
localcolabfold
ColabFold on your local PC
Language:Python1 1 00
non_negative_OLS_keras
Implements non-negative ordinary least squares regression using Keras includes weights-sum-to-one constraint, Lasso L1 regularization and cost weighting per weight
Language:Python1 2 01
ProbabilisticDeepLearningTensorFlow
Material for ODSC Europe presentation -- Probabilistic Deep Learning in TensorFlow, the why and the how
Language:Jupyter Notebook10
RocheHackathon2024
Language:Jupyter Notebook1 1 02
SourceCodeSummary
Generate single text file that represents a python repository for LLMs
Language:Python1 2 00

JudeWells's Repositories

JudeWells/chainsaw
Language:Python28 5 172
JudeWells/localcolabfold
ColabFold on your local PC
Language:Python1 1 00
JudeWells/RocheHackathon2024
Language:Jupyter Notebook1 1 02
JudeWells/SourceCodeSummary
Generate single text file that represents a python repository for LLMs
Language:Python1 2 00
JudeWells/alphafold
Open source code for AlphaFold.
Language:Python0 1 00
JudeWells/Arduino
Language:C0 2 00
JudeWells/cache4
Language:Jupyter Notebook0 1 20
JudeWells/aligned_diffusion_bridges
Aligned Diffusion Schroedinger Bridges (UAI 2023)
Language:Jupyter Notebook0 0
JudeWells/cath-funsite-predictor
Code base for CATH Funsite predictor for generation of protein functional sites
Language:Jupyter Notebook1 0
JudeWells/cluster_dockstring
Language:Shell1 0
JudeWells/cnn
Language:Python2 0
JudeWells/ColabFold
Making Protein folding accessible to all via Google Colab!
Language:Jupyter Notebook1 0
JudeWells/dock_pdbbind
Language:Python1 0
JudeWells/docking
Language:Python1 0
JudeWells/domain_identification
2 0
JudeWells/enamine_cluster
Parse Enamine REAL database in chunks
Language:Python1 0
JudeWells/make_esm_embeddings
Language:Python1 0
JudeWells/md
Language:Python1 0
JudeWells/nn_toolkit
Language:Python
JudeWells/nsp3_hit_expansion
Language:Python1 0
JudeWells/protein_bert
Language:Jupyter Notebook1 0
JudeWells/protein_function_annotation
Look for protein domains (identified by Chainsaw) that might have novel functional annotations
Language:Python1 0
JudeWells/review_chainsaw_unidoc_alphafold
Language:Python1 0
JudeWells/speed_test_chainsaw
Language:Python1 0
JudeWells/spektral_gnn
experiments with creating graph neural networks using the spektral python library
Language:Python2 0
JudeWells/SWORD2
SWift and Optimized Recognition of protein Domains
Language:Perl0 0
JudeWells/t5_basic
Language:Python1 01
JudeWells/ted-tools
ML toolset for creating TED: The Encyclopedia of Domains
Language:Python0 0
JudeWells/vina_docking_cluster
Language:Shell1 0
JudeWells/visually_inspect_cath_s60
Language:Python1 0

JudeWells

Pinned Repositories

chainsaw

keras_anomaly_detection

localcolabfold

non_negative_OLS_keras

ProbabilisticDeepLearningTensorFlow

RocheHackathon2024

SourceCodeSummary

JudeWells's Repositories

JudeWells/chainsaw

JudeWells/localcolabfold

JudeWells/RocheHackathon2024

JudeWells/SourceCodeSummary

JudeWells/alphafold

JudeWells/Arduino

JudeWells/cache4

JudeWells/aligned_diffusion_bridges

JudeWells/cath-funsite-predictor

JudeWells/cluster_dockstring

JudeWells/cnn

JudeWells/ColabFold

JudeWells/dock_pdbbind

JudeWells/docking

JudeWells/domain_identification

JudeWells/enamine_cluster

JudeWells/make_esm_embeddings

JudeWells/md

JudeWells/nn_toolkit

JudeWells/nsp3_hit_expansion

JudeWells/protein_bert

JudeWells/protein_function_annotation

JudeWells/review_chainsaw_unidoc_alphafold

JudeWells/speed_test_chainsaw

JudeWells/spektral_gnn

JudeWells/SWORD2

JudeWells/t5_basic

JudeWells/ted-tools

JudeWells/vina_docking_cluster

JudeWells/visually_inspect_cath_s60