Jun-Lizst

Molecular engineer interested in cell biology and neurobiology questions;

Institute of Organic Chemistry and Biochemistry (IOCB)Prague, Czech republic

Pinned Repositories

3D-printing
Designs for 3D printed parts that were developed in the Zhuang Lab.
Language:OpenSCAD1 0 00
3Dscript
Language:Java1 0 00
BMAv1-Brain-Metabolome-Atlas
Language:R1 1 00
HarvardXCourse
Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/
Language:R4 0 03
leo1234j_website
personal blog of Junliszt
Language:HTML1 1 00
leo1234jv4
Language:HTML1 1 00
MAGeCKFlute
Integrative analysis pipeline for pooled CRISPR functional genetic screens
Language:R3 0 06
ShinyCell
Shiny Interactive Web Apps for Single-Cell Data
Language:R3 0 00
sleepr
Sleep analysis with R.
Language:R2 1 00
TBtools
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
Language:Shell2 0 01

Jun-Lizst's Repositories

Jun-Lizst/3D-printing
Designs for 3D printed parts that were developed in the Zhuang Lab.
Language:OpenSCAD1 0 00
Jun-Lizst/CORNAS
CORNAS is a fast method for reliable DEG calls in unreplicated conditions.
Language:R1 0 0
Jun-Lizst/Deep-Learning
https://github.com/priya-dwivedi/Deep-Learning
Language:Jupyter Notebook1 0 0
Jun-Lizst/MAGESTIC
Language:Python1
Jun-Lizst/massPix
1
Jun-Lizst/multifiber
A GUI and library for doing multi-fiber photometry
Language:MATLAB1 0 0
Jun-Lizst/Python-High-Performance-Second-Edition
Python High Performance – Second Edition, published by Packt
Language:Jupyter Notebook1 0 0
Jun-Lizst/Screening_Protocols_manuscript
Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening
Language:Python1 0 0
Jun-Lizst/SOAPdenovo-Trans
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
Language:C1 0 0
Jun-Lizst/ADplugin
Autodock/Vina plugin for PyMol by Daniel Seeliger
Language:Python
Jun-Lizst/AllenBrainAPI
Access the Allen Brain Atlas API from MATLAB
Language:MATLAB0 0
Jun-Lizst/archive-scater
An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
Language:R
Jun-Lizst/ATAC-seq
ATAC-seq Pipeline in conjunction with Duygu Ucar & Jacques Banchereau Laboratories
Language:Shell0 0
Jun-Lizst/bio-analysis-kit
Scripts for bio-data analysis
Language:Python
Jun-Lizst/bxcheck
Toolset for QC and processing 10x genomics data
Language:C
Jun-Lizst/CellFinder
CellFinder: Automatic detection of cell centers in two-photon calcium images.
Language:MATLAB0 0
Jun-Lizst/chromVAR
chromatin Variability Across Regions (of the genome!)
Language:R0 0
Jun-Lizst/cytomining-hackathon-wiki
Cytomining Hackathon 2016
Language:HTML0 0
Jun-Lizst/FASP
Functional AStrocyte Phenotyping (FASP) is a Fiji plugin that automatically analyzes and characterizes the spatiotemporal functional status of astrocytes from time-lapse Ca2+ imaging data. FASP has been updated to analyze more complex data, especially in-vivo data. The new version is here. https://github.com/yu-lab-vt/AQuA
Language:Java0 0
Jun-Lizst/Fiber-photometry
Language:Python0 0
Jun-Lizst/matlab2opentrons
A matlab library and classes that can communicate with and control an OpenTrons liquid handling robot via Opentrons API
Language:MATLAB
Jun-Lizst/mne_tools
Tools for python MNE Toolbox for EEG data analysis
Language:Python0 0
Jun-Lizst/MultiAnimalTrackerSuite
Multi-Animal Tracker
Language:MATLAB
Jun-Lizst/my_WGCNA
Language:R0 0
Jun-Lizst/myScRNA-seq
Language:HTML0 0
Jun-Lizst/NGS-pipeline
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
Language:Shell0 0
Jun-Lizst/pyflow-ATACseq
ATAC-seq snakemake pipeline
Language:Python0 0
Jun-Lizst/SynthesiaKomplete
Python application to connect Synthesia to the Komplete Kontrol light guide
Language:Python0 0
Jun-Lizst/vimcdoc
Vim 中文文档计划
Language:C0 0
Jun-Lizst/Yeastbow_Cluster
Language:Python0 0