Jun-Lizst

3D-printing

Designs for 3D printed parts that were developed in the Zhuang Lab.

3Dscript

BMAv1-Brain-Metabolome-Atlas

HarvardXCourse

Introduction to Linear Models and Matrix Algebra Course by Rafael Irizarry and Michael Love. http://genomicsclass.github.io/book/

leo1234j_website

personal blog of Junliszt

leo1234jv4

MAGeCKFlute

Integrative analysis pipeline for pooled CRISPR functional genetic screens

ShinyCell

Shiny Interactive Web Apps for Single-Cell Data

sleepr

Sleep analysis with R.

TBtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

Jun-Lizst/BacillusSporeCoat

Data, key results, sample PERL and R codes and for Bacillus Spore Coat project

Jun-Lizst/brainmapr

R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data with in situ RNA patterns from the Allen Developing Mouse Brain Atlas

Jun-Lizst/MSstats_material

R package MSstats material

Jun-Lizst/tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

Jun-Lizst/weixin2py

weixin2py-腾讯微信公众平台自动消息处理程序+SDK（python+django）

Jun-Lizst/AddictionCourse2015

Code and data (or links to data) for Elissa Chesler's Addiction Course in August 2015.

Jun-Lizst/AMPK_motif_analyzer

A position weight matrix based algorithm to score query phosphorylation motifs on similarity to the in vivo AMPK phosphorylation motifs.

Jun-Lizst/call_seq

call_seq is a tool that let you trace code easily. It record function call sequence. So you can learn how the process run.

Jun-Lizst/CUBIC_nprot

Code for the image processing and analysis described our Nature Protocols paper.

Jun-Lizst/DataPro

Package of Igor Pro scripts for doing data acquisition using Instrutech hardware.

Jun-Lizst/eegpy

Library for the analysis of EEG / MEG data

Jun-Lizst/fastqc

csf fork of fastqc for usage on selected reads of unaligned bam file

Jun-Lizst/figshare

Command line client for figshare

Jun-Lizst/GoogleAnalyticsAdvanced

Jun-Lizst/mageck

Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)

Jun-Lizst/NeuroFIT

Cell / Neuron Fluorescent Imaging Toolbox for Matlab

Jun-Lizst/rDrop

Programmatic interface to Dropbox

Jun-Lizst/ROI_detect

Automatic ROI Detection

Jun-Lizst/Rtoolbox

Modeling precision treatment of breast cancer

Jun-Lizst/SabalabSoftware_Nov2009

Jun-Lizst/SEAT

Simple EEG Analysis Tool -- Python EEG Gui using MNE Python for core functionality

Jun-Lizst/temporal-brain-expression

Scripts to analyze spatio temporal brain expression of BrainSpan Developmental Transcriptome data

Jun-Lizst/weixin_sogou

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