Issues
- 0
Transmembrane homodimers/mp_ddG_pipeline
#82 opened by aozalevsky - 0
multiple mutations at the same position(s)
#81 opened by amelie-stein - 1
rosettapdb file also for soluble pipeline
#78 opened by j0kaso - 1
Keep chain flag problem
#80 opened by AleksandraPanfilova - 0
[mp-stability] some superpose not working
#79 opened by j0kaso - 0
- 1
- 0
- 1
- 0
[stability-pipeline] partition can not changed when 'overwrite=True' and e.g. mode='proceed
#70 opened by j0kaso - 1
- 0
- 0
[stability-calculations] Rosetta issue
#65 opened by j0kaso - 1
select only one model when using pdb_renumb
#59 opened by j0kaso - 2
[stability-pipeline] sequence missmatch due to Rosetta conversion of unnatural AA within sequence
#38 opened by j0kaso - 6
consistency checks
#17 opened by amelie-stein - 1
[stability-pipeline] check if chain_id is needed
#28 opened by j0kaso - 1
[stability-pipeline] 2 residues with the same numbering will (likely) cause an error
#31 opened by j0kaso - 0
ddGs on Cys involved in disulfides
#14 opened by amelie-stein - 0
HETATM cleanup
#39 opened by amelie-stein - 11
- 3
PDB download error
#21 opened by amelie-stein - 2
ddG parsing error
#22 opened by lydia-good - 2
memory requirements - relax
#13 opened by amelie-stein - 1
memory requirements - ddG
#12 opened by amelie-stein - 3
Influence of missing side-chain atoms
#10 opened by j0kaso - 2
Treating of missing residues
#7 opened by j0kaso - 8
- 2
missing SC realignment bug for ddG postprocessing
#56 opened by j0kaso - 0
- 1
- 1
Span file issues
#8 opened by j0kaso - 4
-s input - structure or PDB_ID?
#20 opened by amelie-stein - 1
- 1
- 1
create automated unit run test
#43 opened by j0kaso - 1
[MP-stability] Homo-dimers
#46 opened by j0kaso - 1
[stability_pipeline] prism-to-mut mapping error when having pdb file with several chains
#34 opened by j0kaso - 0
- 0
mutfiles as input for MP pipeline
#45 opened by j0kaso - 2
Not all mutations recognized (mutfile)
#9 opened by j0kaso - 1
remove prism input option
#44 opened by j0kaso - 1
renaming prims to prism
#42 opened by j0kaso - 1
[stability-pipeline] mp superpose mix-up
#35 opened by j0kaso - 3
- 4
- 2
parallelise initial relax
#15 opened by amelie-stein - 4
error - maybe just because no input provided
#19 opened by amelie-stein - 1
Extra job created in ddG calculation
#23 opened by lydia-good - 0
errors, warnings & clean-up
#18 opened by amelie-stein