KennedyO-Bal

KennedyO-Bal's Stars

• tmux/tmux

  tmux source code

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• IRkernel/IRkernel

  R kernel for Jupyter

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• MareesAT/GWA_tutorial

  A comprehensive tutorial about GWAS and PRS

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• LaPreprint/LaPreprint

  📝 A nicely formatted LaTeX preprint template

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• hbctraining/DGE_workshop

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• kpatel427/YouTubeTutorials

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• jsh58/Genrich

  Detecting sites of genomic enrichment

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• PrincetonUniversity/hpc_beginning_workshop

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• zhengxwen/SNPRelate

  R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

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• odelaneau/shapeit4

  Segmented HAPlotype Estimation and Imputation Tool

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• tobiasrausch/ATACseq

  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

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• igvteam/igv-notebook

  Module for embedding igv.js in an IPython notebook

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• ParkerLab/ataqv

  A toolkit for QC and visualization of ATAC-seq results.

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• hewm2008/VCF2PCACluster

  A new simple and efficient software to PCA and Cluster For popolation VCF File

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• gatk-workflows/five-dollar-genome-analysis-pipeline

  Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline

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• ELTEbioinformatics/mulea

  mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate

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• PrincetonUniversity/HPC_R_Workshop

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• MD-Anderson-Bioinformatics/BatchEffectsPackage

  The MBatch R package and Docker image are designed to help assess and correct for batch effects.

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• Eco-Flow/synteny

  A Nextflow pipeline for running synteny analysis.

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• prog4biol/pfb2022

  Programming for Biology Class @ CSHL 2022

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• annaorteu/wrath

  Wrath: WRapped Analysis of Tagged Haplotypes

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• niaid/UMI-pacbio-pipeline

  Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).

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• vappiah/Transcriptomics

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• OKersten/PuffPopGen

  Population genomics analysis of the Atlantic Puffin across it's breeding range. The results and interpretation are presented in Kersten et al. 2021 (https://www.nature.com/articles/s42003-021-02415-4)

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• vappiah/population-genetics

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• kdelmore/swth_rnaseq

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• RishiDeKayne/Danaus_WGS

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• EmelineFavreau/Vespa-Genomes-Analyses

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• mikheyev/monomorium-polyethism

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• zgompert/TimemaRW

  Scripts and notes for the Timema knulli Redwood inversion project

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