KennedyO-Bal's Stars
tmux/tmux
tmux source code
IRkernel/IRkernel
R kernel for Jupyter
MareesAT/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
LaPreprint/LaPreprint
📝 A nicely formatted LaTeX preprint template
hbctraining/DGE_workshop
simonhmartin/genomics_general
General tools for genomic analyses.
kpatel427/YouTubeTutorials
jsh58/Genrich
Detecting sites of genomic enrichment
PrincetonUniversity/hpc_beginning_workshop
zhengxwen/SNPRelate
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
tobiasrausch/ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
ParkerLab/ataqv
A toolkit for QC and visualization of ATAC-seq results.
igvteam/igv-notebook
Module for embedding igv.js in an IPython notebook
gatk-workflows/five-dollar-genome-analysis-pipeline
Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
hewm2008/VCF2PCACluster
A new simple and efficient software to PCA and Cluster For popolation VCF File
PrincetonUniversity/HPC_R_Workshop
MD-Anderson-Bioinformatics/BatchEffectsPackage
The MBatch R package and Docker image are designed to help assess and correct for batch effects.
prog4biol/pfb2022
Programming for Biology Class @ CSHL 2022
Eco-Flow/synteny
A Nextflow pipeline for running synteny analysis.
ELTEbioinformatics/mulea
mulea - an R package for enrichment analysis using various ontologies and empirical FDR correction
annaorteu/wrath
Wrath: WRapped Analysis of Tagged Haplotypes
vappiah/Transcriptomics
CWML/intro-to-python-cwml-workshop
KrishnaswamyLab/CSHL_ComputationalGenomics2022
vappiah/population-genetics
kdelmore/swth_rnaseq
OKersten/PuffPopGen
Population genomics analysis of the Atlantic Puffin across it's breeding range. The results and interpretation are presented in Kersten et al. 2021 (https://www.nature.com/articles/s42003-021-02415-4)
EmelineFavreau/Vespa-Genomes-Analyses
mikheyev/monomorium-polyethism
zgompert/TimemaRW
Scripts and notes for the Timema knulli Redwood inversion project