LiorZ

cyrusmol_v2

CyrusMol is an experimental frontend for molecular modelling simulators such as Rosetta

differential_seqlogo

Comparative sequence logo

Kinetix

This is a simple framework for multiple reaction enzyme kinetics simulation

orientdb-examples

Minimal example to using Orient-DB for persistence

playframework_chat

This is a chat application built with the playframework, primarily as a learning experience.

RosettaDiagrams

RosettaDiagrams allows you to create protein modeling protocols with Rosetta by drawing the protocol as a diagram in a browser.

LiorZ/differential_seqlogo

Comparative sequence logo

LiorZ/Kinetix

This is a simple framework for multiple reaction enzyme kinetics simulation

LiorZ/alphafold

Open source code for AlphaFold.

LiorZ/alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

LiorZ/andreychemist.github.io

LiorZ/bert-nmt

LiorZ/BioNavi-NP

Biosynthesis Navigator for Natural Products

LiorZ/BioPython-A3MIO

A3M/A2M support for BioPython

LiorZ/boltz

Official repository for the Boltz-1 biomolecular interaction model

LiorZ/BRENDApyrser

A Python parser for the BRENDA database

LiorZ/ColabFold

Making Protein folding accessible to all via Google Colab!

LiorZ/deep-learning-project-template

Pytorch Lightning code guideline for conferences

LiorZ/deeplearning-biology

A list of deep learning implementations in biology

LiorZ/deepmind-research

This repository contains implementations and illustrative code to accompany DeepMind publications

LiorZ/EnzymeFlow

EnzymeFlow official.

LiorZ/esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

LiorZ/GENzyme

Official repository of GENzyme

LiorZ/ha-prod-cost

LiorZ/luma.core

A component library providing a Pillow-compatible drawing canvas, and other functionality to support drawing primitives and text-rendering capabilities for small displays on the Raspberry Pi and other single board computers.

LiorZ/myblog

LiorZ/paper-a-day

This is a repo for tracking my daily paper reading habit

LiorZ/perceiver-ar-pytorch

Implementation of Perceiver AR, Deepmind's new long-context attention network based on Perceiver architecture, in Pytorch

LiorZ/protein_generator

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

LiorZ/protein_scoring

Generating and scoring novel enzyme sequences with a variety of models and metrics

LiorZ/ProteinMPNN

Code for the ProteinMPNN paper

LiorZ/SaProt

[ICLR'24 spotlight] Saprot: Protein Language Model with Structural Alphabet

LiorZ/seminal-deep-learning-biology

Seminal Deep Learning papers in biology and biomedicine

LiorZ/tank-arena

LiorZ/todo-list-python

A simple To Do List with Python and Flask Framework

LiorZ/tr-rosetta-pytorch

Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design