Lisa-Jammy

Lisa-Jammy's Stars

• JarningGau/ProjectSVR

  A package for reference mapping and nice visualization

  Language:R19

• Teichlab/Pan_fetal_immune

  Collection of scripts for analysis of pan fetal immune atlas

  Language:Jupyter Notebook256

• ixxmu/mp_duty

  抓取网络文章到github issues保存

  Language:Ruby12230

• harbourlab/PieParty

  represent each cell in UMAP plots as a pie chart

  Language:Python162

• junjunlab/junjunlab

  Language:R181

• TheHumphreysLab/Mouse_DKD_Rx_Atlas

  Language:R165

• hbctraining/scRNA-seq

  Language:SCSS535224

• broadinstitute/infercnv

  Inferring CNV from Single-Cell RNA-Seq

  Language:R565166

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k227

• KrishnaswamyLab/phateR

  PHATE dimensionality reduction method implemented in R

  Language:HTML779

• matanhofree/lungTumorEvolution

  Algorithms and code developed as part of the study described in Marjanovic et al.

  Language:Jupyter Notebook91

• aertslab/pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python443182

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java984368

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k557

• zwj-tina/scibetR

  Language:R72

• BaderLab/singleLiverCells

  Scripts for processing single liver cells RNA-Seq 10X Genomics Data

  Language:R2310

• BaderLab/HumanLiver

  R Data: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

  Language:R2711

• cole-trapnell-lab/monocle-release

  Language:R280116

• saeyslab/nichenetr

  NicheNet: predict active ligand-target links between interacting cells

  Language:R487117

• Teichlab/cellphonedb

  Language:Python345105