LucoLab

LucoLab's Stars

• deeptools/pyBigWig

  A python extension for quick access to bigWig and bigBed files

  Language:C218610149

• BrooksLabUCSC/flair

  Full-Length Alternative Isoform analysis of RNA

  Language:Python2131434571

• Zhong-Lab-UCSD/Genomic-Interactive-Visualization-Engine

  Genomic Interactive Visualization Engine

  Language:JavaScript145103231

• harvardinformatics/ATAC-seq

  Language:Python12210040

• kundajelab/chipseq_pipeline

  AQUAS TF and histone ChIP-seq pipeline

  Language:Java105404340

• 4dn-dcic/hic2cool

  Lightweight converter between hic and cool contact matrices.

  Language:Python6710417

• mortazavilab/TranscriptClean

  Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

  Language:Python6763716

• murphycj/AGFusion

  Python package to annotate and visualize gene fusions.

  Language:Python6054525

• benedictpaten/marginAlign

  UCSC Nanopore

  Language:Python4384813

• vaquerizaslab/tadtool

  TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

  Language:Python4332913

• huangyh09/brie

  BRIE: Bayesian Regression for Isoform Estimate in Single Cells

  Language:Python41105115

• jw156605/SingleSplice

  Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: http://nar.oxfordjournals.org/content/early/2016/01/05/nar.gkv1525.full

  Language:C++21445

• YeoLab/singlecell_pnm

  :sparkles: Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neuron differentiation" by Song and Botvinnik, et al

  Language:Jupyter Notebook204537

• hclimente/spada

  ⚔️Find splicing-led, functional changes of the proteome.

  Language:Python10141