Issues
- 0
Solver for TPT for Markov jump processes
#44 opened by LuzieH - 0
- 0
sparse TPT
#39 opened by LuzieH - 0
Package the project
#4 opened by riberaborrell - 0
super class for the 3 cases. Subclasses inherit save and compute statistics.
#34 opened by riberaborrell - 0
Write docstrings using Google Style
#30 opened by riberaborrell - 0
PEP8
#2 opened by riberaborrell - 15
Write tests
#3 opened by riberaborrell - 3
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Examples as ipython notebooks
#40 opened by LuzieH - 2
Irreducibility of a stochastic matrix.
#41 opened by riberaborrell - 1
Plotting (and shortest paths) of f^+ in the small network example (finite time and periodic)
#24 opened by LuzieH - 1
transitionmatrix_2D() method
#38 opened by riberaborrell - 0
Transition matrix methods not duplicated
#36 opened by riberaborrell - 5
- 1
bug with bbox_inches='tight'
#37 opened by riberaborrell - 0
function descriptions
#28 opened by LuzieH - 1
Choose new package name and class names
#35 opened by LuzieH - 1
folder structure
#32 opened by riberaborrell - 0
- 0
generalize (periodic, finite-time) tpt code to work with time-dependent sets A and B
#11 opened by LuzieH - 0
colorbar for the network examples
#31 opened by riberaborrell - 0
change assert check on every method
#16 opened by riberaborrell - 4
New plots for the network example
#6 opened by riberaborrell - 1
Videos of numerical examples
#27 opened by LuzieH - 0
plotting method showing the effective current and the rate in the same graph
#29 opened by riberaborrell - 0
- 1
do we need current_dens() method in tpt?
#13 opened by LuzieH - 1
Plot for introduction of paper
#26 opened by LuzieH - 1
Bifurcation in Triple well Example
#22 opened by LuzieH - 0
computation of mean transition length
#23 opened by LuzieH - 1
visualization of the tpt triple well example
#10 opened by LuzieH - 0
transition matrix from samples
#18 opened by LuzieH - 2
plot potential + forcing
#20 opened by riberaborrell - 0
Choosing Journal
#25 opened by riberaborrell - 1
add features to plot_convergence()
#19 opened by riberaborrell - 0
- 1
- 1
Move plot methods to a separate module.
#17 opened by riberaborrell - 0
migration to python3
#1 opened by riberaborrell - 2
rewrite reac_density() for the three cases
#12 opened by riberaborrell - 0
Apply TPT to Langevin dynamics in a 3-well
#7 opened by LuzieH - 0