MASI Lab @ Vanderbilt

Medical-image Analysis and Statistical Interpretation (MASI)

United States of America

Pinned Repositories

3DUX-Net
Language:Python244 2 7634
ALARM
7 10 11
Pandora-WhiteMatterAtlas
6 6 12
PreQual
An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
Language:Python40 1 98
pyPheWAS
MASI Lab Implementation of PheWAS in Python
Language:Python26 7 43
SLANTbrainSeg
Deep Whole Brain Segmentation Using SLANT Method
Language:Python109 13 1431
Synb0-DISCO
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
Language:Python58 14 6928
SynBOLD-DisCo
Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
Language:Python13 3 44
SynSeg-Net
SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth
Language:Python65 6 318
UNesT
The official Pytorch implementation of UNesT
Language:Python18 3 35

MASI Lab @ Vanderbilt 's Repositories

MASILab/SLANTbrainSeg
Deep Whole Brain Segmentation Using SLANT Method
Language:Python109 13 1431
MASILab/Synb0-DISCO
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
Language:Python58 14 6928
MASILab/PreQual
An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
Language:Python40 1 98
MASILab/pyPheWAS
MASI Lab Implementation of PheWAS in Python
Language:Python26 7 43
MASILab/UNesT
The official Pytorch implementation of UNesT
Language:Python18 3 35
MASILab/S-EFOV
S-EFOV: Thoracic CT-based Body Composition Analysis with Semantically Extended FOV
13 3 32
MASILab/SynBOLD-DisCo
Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
Language:Python13 3 44
MASILab/cornn_tractography
Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
Language:Python12 3 11
MASILab/deform-uxnet
Language:Python12 2 11
MASILab/lmsignatures
Language:Python5 2 0
MASILab/DeepLungScreening
Language:Python3 4 0
MASILab/MaCRUISE
3 8 21
MASILab/AtlasToDiffusionReg
singularity to register an atlas to the diffusion space of a subject
Language:Jupyter Notebook1 2 0
MASILab/DAPIArtifactRemoval
Language:Shell1 3 0
MASILab/ADSP_AutoQA
Automated QA for ADSP processing
Language:Python
MASILab/atlas_surface_rendering
Generate a surface to show the deformation from registering subjects to an atlas
Language:Jupyter Notebook0 0
MASILab/cellNN
3 0
MASILab/ChatRTX
A developer reference project for creating Retrieval Augmented Generation (RAG) chatbots on Windows using TensorRT-LLM
Language:Python
MASILab/deedsBCV_multimodal_mri
Forked to include pre and post processing to enable registration of abdominal T1 and T2 MRI. Both of these modlaities are differently anisotropic. These modifications allow for deeds deformably registered moving image to align with the unaltered anisotropic fixed image.
Language:C++0 0
MASILab/DeepN4
Language:Jupyter Notebook2 01
MASILab/dss_fmri_atlas
Diffusion-informed spatial smoothing fMRI atlas
Language:Python
MASILab/he_stain_translation_cyclegan
Language:Python
MASILab/hovernets_on_vhe
Language:Python
MASILab/Informatics_ADSP
Language:Shell
MASILab/michael_kim_overview
Overview of all projects by Michael Kim (kimm58)
MASILab/nnUNet_midl_2024
add custom models
Language:Python
MASILab/nucleus_and_cell_classification_on_he
Classify nuclei/cells on intestinal H&E into 14 different classes
Language:Jupyter Notebook
MASILab/Variance-Aging-Diffusion
Language:Jupyter Notebook2 0
MASILab/vss_fmri
Vasculature-informed spatial smoothing for fMRI
Language:Python
MASILab/WM_fMRI_atlas_Yang