MDU-PHL/bohra

Useful enhancements

Opened this issue · 1 comments

JA-Lacey commented

Hey @kristyhoran
List of potential enhancements that could be useful to implement for bohra we have discussed.

  1. make bohra compatible using a contigs only set of inputs - that way can be used for just reference sequences etc.

  2. be able to point to a pre-exisiting kraken outputs in the same way as ---contigs (-c) is used (Kraken is the slowest step after genome assembly so this could speed up run times if kraken has been previously run outside of bohra)

Thanks

tseemann commented

@JA-Lacey can you please break this into separate issues and assign Krsity and label as Enhancement. and then close this issue?