Issues
- 0
Useful enhancements
#80 opened by JA-Lacey - 0
- 0
- 0
- 0
Int bug if sample name is an interger
#76 opened by kristyhoran - 0
Fix up core genome graph
#75 opened by kristyhoran - 2
There is something wrong with your reference file. Valid file types are .fasta, .gbk, .fasta.gz, .gbk.gz. Please check your inputs and try again.
#70 opened by Vikash84 - 1
Containerized Bohra installation
#72 opened by tetedange13 - 0
Software used for the specific analysis
#74 opened by ckhiggs - 0
- 0
- 0
Add DOI and PMID for all tools used
#67 opened by tseemann - 0
Which is the real Bohra repo?
#62 opened by tseemann - 1
Thread pool reached error
#59 opened by kristyhoran - 0
Remove alert from iqtree
#60 opened by kristyhoran - 0
Bohra fails with no params
#61 opened by tseemann - 0
Tidy up directory
#54 opened by kristyhoran - 0
- 0
Process customisation
#50 opened by kristyhoran - 0
Partition out tasks
#56 opened by kristyhoran - 1
Annotation module for 'bakta'
#68 opened by tseemann - 0
Clarify babykraken is not actually "useful"
#66 opened by tseemann - 0
Check mlst
#55 opened by kristyhoran - 0
Update CLI and config with snippy params
#52 opened by kristyhoran - 0
Substitute panaroo for roary
#57 opened by kristyhoran - 0
Investigate regex for reads
#53 opened by kristyhoran - 0
Keep amrfinder output
#51 opened by kristyhoran - 1
Small miss used variable in bohra
#45 opened by abcdtree - 0
Add versions to software check
#47 opened by kristyhoran - 3
fail gracefully if files are not accessible
#48 opened by kristyhoran - 0
MLST bug
#40 opened by kristyhoran - 0
- 0
Rerunning preview after running snps fails
#43 opened by kristyhoran - 1
rerun bug
#41 opened by kristyhoran - 1
- 1
- 1
Bug when reference is FASTA
#39 opened by andersgs - 1
Include ref(s) in preview mode
#38 opened by andersgs - 0
"bohra run" no params is a traceback mess
#35 opened by tseemann - 0
nulla2bohra requirements
#36 opened by tseemann - 0
Add 'check' subcommand
#37 opened by tseemann - 1
run/rerun `-f` flag not working
#33 opened by willpitchers - 0
cluster.json and snakemake command
#28 opened by kristyhoran - 0
add in a setup command
#31 opened by kristyhoran - 0
Add support for contig in core genome graph
#27 opened by kristyhoran - 0
--dryrun should be --dry-run and -n
#32 opened by tseemann - 0
error in unzip
#29 opened by kristyhoran - 0
error in dryrun
#30 opened by kristyhoran - 0
Typo in my name
#25 opened by tseemann - 1
What is --workdir ?
#26 opened by tseemann