MLforHealth/MIMIC_Extract

Issues

• missing mimic_extract_env_py36.yml

  #81 opened 3 months ago by knutj
  0

• 关于ECGNN代码相关

  #80 opened 3 months ago by Chipsovo
  0

• The shape of extrated data is diff to the notebook

  #52 opened 4 years ago by zhaoxiongjun
  2

• README update

  #77 opened 6 months ago by majedov
  0

• Is the preprocessed data in google bucket still available?

  #76 opened 7 months ago by zhaohan-xi
  0

• MIMIC-Extract for MIMIC-IV

  #30 opened 10 months ago by bbardakk
  6

• Is it possible to change the frequency from 1 hour to 15 minutes for example?

  #75 opened 10 months ago by mahmoudibrahim98
  0

• Why 3 and 7 days are selected for LOS?

  #68 opened a year ago by bbardakk
  1

• GCP access issue

  #64 opened 3 years ago by ajain720
  4

• to speed up "Saving notes" step

  #74 opened a year ago by yezhengli-Mr9
  0

• Empty icuid issue when execute mimic_direct_extract.py

  #73 opened 2 years ago by a11525
  0

• Likely bug in `fix_deid_tokens` regexp

  #71 opened 2 years ago by SphtKr
  0

• Bug in AUROC/AUPRC calculation

  #69 opened 2 years ago by 2533245542
  1

• relation "mimiciii.ccs_dx" does not exist

  #65 opened 3 years ago by Tokyosunrise
  3

• relation "colloid_bolus" does not exist

  #59 opened 3 years ago by saeedehghanadbashi
  1

• Invasive and non-invasive ventilation?

  #70 opened 2 years ago by GilesLuo
  0

• KeyError: 'subject_id" when calling pd.DataFrame.pivot_table in mortality / LOS baseline

  #48 opened 4 years ago by jamin-chen
  2

• vitals_hourly_data includes lots of duplicates

  #63 opened 3 years ago by juliangilbey
  0

• There maybe bugs in simple_imputer() when computing "hours of absence"

  #27 opened 4 years ago by xlbryantx
  4

• How to get .pkl file?

  #60 opened 3 years ago by TianJl1999
  0

• code redundancy in GRUD forward method

  #58 opened 3 years ago by 2533245542
  1

• tables.exceptions.HDF5ExtError: Problems creating the Array

  #57 opened 3 years ago by 2533245542
  2

• How to contribute?

  #51 opened 3 years ago by corcra
  1

• Why feature dimension largely reduced i.e. 6-19 features depending on the value of missingness. for instance: with 100% missing values will have 104 or so columns, but if we set to 1 or 50% missing values it will be reduced up to 6 features where number of patient is constant.

  #53 opened 3 years ago by pvsnp9
  1

• An issue with GRUD

  #56 opened 3 years ago by JHLiu7
  5

• PackagesNotFoundError: The following packages are not available from current channels:

  #55 opened 3 years ago by zhangyongheng78
  0

• GCP Issue: Additional permissions required to list objects in this bucket.

  #54 opened 3 years ago by zhangyongheng78
  1

• feature size of all_hour_data.h5 generate using --no_group_by_level2 True

  #50 opened 4 years ago by pvsnp9
  0

• Authorization issue mimic_extract Google Cloud Bucket: Forbidden Error 403

  #49 opened 4 years ago by hildeweerts
  2

• What does statics.max_hours mean? I can not get this column.

  #26 opened 4 years ago by xlbryantx
  9

• Problem downloading pre-processed output from GCP

  #46 opened 4 years ago by amakelov
  5

• Bug in mimic_direct_extract.py: 'Series' object has no attribute 'columns' on line 973

  #47 opened 4 years ago by amakelov
  0

• Problem downloading pre-processed output from GCP

  #45 opened 4 years ago by amakelov
  1

• How to extract the data for all admissions instead of the first ICU admission?

  #44 opened 4 years ago by stdoo
  0

• `max_hours` addition to the statics dataframe should not happen as an undocumented byproduct of save_numerics

  #43 opened 4 years ago by mmcdermott
  0

• How to extract multiple ICU stays from each patient?

  #40 opened 4 years ago by ducnx
  2

• Question about removing variables with high missing values

  #42 opened 4 years ago by ducnx
  1

• How to remove grouping measurements hourly

  #41 opened 4 years ago by ducnx
  1

• We should likely extract valuenum instead of value

  #39 opened 4 years ago by mmcdermott
  0

• Extracting valuenum instead of value

  #37 opened 4 years ago by RotemSap
  2

• Itemid_to_variable line 13252 has 28 values

  #35 opened 4 years ago by andinjo
  2

• No object named vitals_labs in the file

  #33 opened 4 years ago by sarwart
  1

• Querying lab items information

  #34 opened 4 years ago by JHLiu7
  1

• Missing en-core-web-sm for conda environment ?

  #28 opened 4 years ago by damaskino
  5

• LOINC codes in item_id_to_variable_map.csv

  #23 opened 4 years ago by Amin-Tajgardoon
  1

• Does mimic-extract start from ICU or Hospital admission?

  #29 opened 4 years ago by bbardakk
  2

• Own itemid_to_variable_map

  #22 opened 5 years ago by RotemSap
  2

• "make build_concepts" does not work.

  #19 opened 4 years ago by elmonten
  3

• ENH allow config option to set bucket size (current default hourly, hard coded)

  #20 opened 5 years ago by michaelchughes
  0

• Number of Vital and lab feature

  #21 opened 5 years ago by huynguyen97
  1