MMathisLab

PI @AdaptiveMotorControlLab | CEBRA | DeepLabCut | co-founder @kinematik-ai

@AdaptiveMotorControlLab

Pinned Repositories

AmadeusGPT
We turn natural language descriptions of behaviors into machine-executable code
Language:Python215 2 78
CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
Language:Python966 34 4983
CellSeg3D
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
Language:Jupyter Notebook80 3 2913
DLC2Kinematics
a module for kinematic analysis of deeplabcut outputs
Language:Jupyter Notebook138 15 1626
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Language:Python4.9k 126 2k1.7k
DeepLabCut-live
SDK for running DeepLabCut on a live video stream
Language:Python204 17 6751
DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
Language:Jupyter Notebook2 1 00
MotionMapper
Sample implementation of the MotionMapper behavioral analysis algorithms
Language:MATLAB9 1 010
MotorLearningModel
Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049
Language:Python3 4 20
Nx-435_EPFL
Language:Jupyter Notebook5 0 05

MMathisLab's Repositories

MMathisLab/Nx-435_EPFL
Language:Jupyter Notebook5 0 05
MMathisLab/MotorLearningModel
Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049
Language:Python3 4 20
MMathisLab/DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
Language:Jupyter Notebook2 1 00
MMathisLab/EPFL_TenurePacket_latexTemplate
Language:TeX2 2 0
MMathisLab/AcinoSet
A repository to reconstruct cheetahs into 3D from videos
Language:Jupyter Notebook1 1 01
MMathisLab/awesome-neural-geometry
A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond
1 0 0
MMathisLab/CEBRA-demos
CEBRA Demo Notebooks. Please see all of them at the URL below:
Language:Jupyter Notebook1
MMathisLab/keypoint-moseq
Language:Python1 0 0
MMathisLab/scanreader
Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
Language:Python1 1 0
MMathisLab/AROS
💍
Language:Jupyter Notebook
MMathisLab/awesome-ai-residency
List of AI Residency Programs
MMathisLab/BUCTD
Official Open Source code for "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"
0 0
MMathisLab/CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
MMathisLab/CellSeg3d
a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training, inference, and review of masks
Language:Jupyter Notebook0 0
MMathisLab/DataJoint_Demo_DeepLabCut
Language:Python2 01
MMathisLab/deepgraphpose
DeepGraphPose
Language:Python1 0
MMathisLab/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Language:Python
MMathisLab/deeplabcut-1
A Bonsai interface for real-time markerless pose estimation using DeepLabCut
Language:C#1 0
MMathisLab/DeepLabCut-cookbook
Scipy Cookbook
Language:Jupyter Notebook0 0
MMathisLab/DeepLabCut-core
Headless DeepLabCut (no GUI support)
Language:Python0 0
MMathisLab/DeepLabCut-live-GUI
GUI to run DeepLabCut on live video feed
Language:Python1 0
MMathisLab/DeepLabCut_maDLC_DemoData
Example DeepLabCut projects
Language:Jupyter Notebook1 0
MMathisLab/DLC2Kinematics
a module for kinematic analysis of deeplabcut outputs
Language:Python1 0
MMathisLab/LINdoscope2023
Notebooks and code for the 2023 EMBO course on imaging and data analysis
Language:Jupyter Notebook
MMathisLab/llavaction
Language:JavaScript
MMathisLab/MMathisLab
MMathisLab/odeformer
Language:Jupyter Notebook0 0
MMathisLab/openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
Language:Python0 0
MMathisLab/swiftascmaps
Taylor Swift-inspired color maps
MMathisLab/VAME
Variational Animal Motion Embedding
Language:Python1 0