MMathisLab
PI @AdaptiveMotorControlLab | CEBRA | DeepLabCut | co-founder @kinematik-ai
@AdaptiveMotorControlLab
Pinned Repositories
AmadeusGPT
We turn natural language descriptions of behaviors into machine-executable code
CEBRA
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
CellSeg3D
A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
DLC2Kinematics
a module for kinematic analysis of deeplabcut outputs
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
DeepLabCut-live
SDK for running DeepLabCut on a live video stream
DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
MotionMapper
Sample implementation of the MotionMapper behavioral analysis algorithms
MotorLearningModel
Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049
Nx-435_EPFL
MMathisLab's Repositories
MMathisLab/Nx-435_EPFL
MMathisLab/MotorLearningModel
Contains Code used in Mathis et al. 2017, DOI: http://dx.doi.org/10.1016/j.neuron.2017.02.049
MMathisLab/DeepLabCut-Workshop-Materials
Workshop material for using DeepLabCut
MMathisLab/EPFL_TenurePacket_latexTemplate
MMathisLab/AcinoSet
A repository to reconstruct cheetahs into 3D from videos
MMathisLab/awesome-neural-geometry
A curated collection of resources and research related to the geometry of representations in the brain, deep networks, and beyond
MMathisLab/keypoint-moseq
MMathisLab/scanreader
Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).
MMathisLab/AROS
💍
MMathisLab/awesome-ai-residency
List of AI Residency Programs
MMathisLab/BUCTD
Official Open Source code for "Rethinking pose estimation in crowds: overcoming the detection information-bottleneck and ambiguity"
MMathisLab/CEBRA-test
Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA
MMathisLab/CellSeg3d
a napari plug-in for direct 3D cell segmentation on cleared tissue -- taking you through training, inference, and review of masks
MMathisLab/DataJoint_Demo_DeepLabCut
MMathisLab/deepgraphpose
DeepGraphPose
MMathisLab/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
MMathisLab/deeplabcut-1
A Bonsai interface for real-time markerless pose estimation using DeepLabCut
MMathisLab/DeepLabCut-cookbook
Scipy Cookbook
MMathisLab/DeepLabCut-core
Headless DeepLabCut (no GUI support)
MMathisLab/DeepLabCut-live-GUI
GUI to run DeepLabCut on live video feed
MMathisLab/DeepLabCut_maDLC_DemoData
Example DeepLabCut projects
MMathisLab/DLC2Kinematics
a module for kinematic analysis of deeplabcut outputs
MMathisLab/DLCutils
Various scripts to support deeplabcut...
MMathisLab/Docker4DeepLabCut2.0
Docker container for running DeepLabCut2.0 (linux support only)
MMathisLab/LINdoscope2023
Notebooks and code for the 2023 EMBO course on imaging and data analysis
MMathisLab/MMathisLab
MMathisLab/odeformer
MMathisLab/openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
MMathisLab/swiftascmaps
Taylor Swift-inspired color maps
MMathisLab/VAME
Variational Animal Motion Embedding