Pinned Repositories
awesome-ai
Awesome list for all things AI, ML and deep learning
epigraphdb
Examples on using EpiGraphDB
epigraphdb-pqtl
This is the github repository to provide the R scripts been used in the phenome-wide Mendelian randomization study of plasma proteome.
gwas2vcf
Convert GWAS summary statistics to VCF
gwasglue
Linking GWAS data to analytical tools in R
gwasvcf
Reading, querying and writing GWAS summary data in VCF format
ieugwasr
R interface to the IEU GWAS database API
MRInstruments
Data objects for various sets of instruments
PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
TwoSampleMR
R package for performing 2-sample MR using MR-Base database
MRC Integrative Epidemiology Unit's Repositories
MRCIEU/Health-and-Wellbeing-MR
MRCIEU/PhenoSpD
MRCIEU/PHESANT-MR-pheWAS-BMI
MRCIEU/ariesmqtl
Scripts to run mQTL analyses as described in the ARIES mQTL paper
MRCIEU/qqman_multiple_colours
Manhattan plot function which highlights SNPs in different colours
MRCIEU/vcf-reference-datasets
MRCIEU/activityBigrams
Physical activity phenotyping with activity bigrams, and their association with BMI
MRCIEU/godmc_phase1_analysis
MRCIEU/mdNLR-and-Rheumatoid-Arthritis-Script
Rheumatoid arthritis (RA) is a disease of chronic systemic inflammation (SI). In the present study, we used four datasets to explore whether methylation-derived neutrophil-to-lymphocyte ratio (mdNLR) might be a marker of SI in new onset, untreated, and treated prevalent RA cases and/or a marker of treatment response to the tumour necrosis factor inhibitor (TNFi) etanercept.
MRCIEU/fertility-study
MRCIEU/test_delete_me
MRCIEU/Effect-of-hyperglycemia-and-hyperinsulinemia-on-podocyte-DNA-methylation
MRCIEU/fathmm
The Functional Analysis through Hidden Markov Models Software and Server
MRCIEU/godmc-database
MRCIEU/mbe
MR mode-based estimate (MBE)
MRCIEU/mr-base-paper