MaayanLab/blitzgsea

Issues

• ZeroDivisionError

  #35 opened 4 months ago by polrus
  2

• Running multiple test should only be done when number of tests > 0

  #34 opened 5 months ago by robinpaul85
  1

• How to handle FDR of 0 and -inf/inf NES?

  #33 opened 6 months ago by benwilks
  3

• runtime error in running blitzgsea

  #32 opened 7 months ago by robinpaul85
  6

• Question about signature_cache parameter

  #31 opened 7 months ago by yihming
  5

• are there cases for significantly enriched pathways found without any genes in leading edges?

  #28 opened 7 months ago by tom-gome
  3

• Wrong data type of returned `running_sum` when sum_hit_scores == 0

  #26 opened 7 months ago by chienhsiang
  0

• ValueError: x and y arrays must be equal in length along interpolation axis.

  #20 opened 7 months ago by scottgigante-immunai
  1

• two gene sets GSEA, DGSEA module

  #7 opened 7 months ago by abearab
  1

• Default value for parameter `symmetric`

  #29 opened 7 months ago by bli25
  1

• FitDataError: Invalid values in `data` for gamma.fit

  #30 opened 7 months ago by yihming
  4

• randomness in blitz.gsea() results

  #27 opened 10 months ago by jacqueline-alector
  1

• Make interactive plotting optional

  #25 opened a year ago by Zethson
  8

• ES & NES signs are flipped

  #23 opened a year ago by Hila-Sharim
  3

• KeyError: 'xvalues'

  #21 opened 2 years ago by scottgigante-immunai
  1

• Inverted NES values

  #19 opened 2 years ago by kohcl17
  1

• Error with `shared_null=True`: erfinv(x) is defined only for -1 <= x <= 1

  #13 opened 2 years ago by scottgigante-immunai
  9

• TypeError: FitDataError.__init__() missing 2 required positional arguments: 'lower' and 'upper'

  #14 opened 2 years ago by MrOlm
  2

• Running blitzgsea with more than one signature at a time

  #8 opened 2 years ago by scottgigante-immunai
  8

• SystemError: <class 'numpy.linalg.LinAlgError'> returned a result with an exception set

  #12 opened 2 years ago by MrOlm
  4

• ValueError: Sample larger than population or is negative

  #11 opened 2 years ago by MrOlm
  7

• Why capitalize terms?

  #10 opened 2 years ago by searchlie
  1

• Testing small gene sets with blitzgsea

  #4 opened 2 years ago by dinithins
  3

• Is it possible to run multiple signatures in parallel?

  #5 opened 2 years ago by alexlenail
  3

• GeneSigDB term names

  #3 opened 2 years ago by alexlenail
  3

• Error `LinAlgError: SVD did not converge in Linear Least Squares`

  #2 opened 2 years ago by abearab
  2