Ma'ayan Lab

Developing Computational Methods to Study the Complexity of Regulatory Networks in Mammalian Cells

New York City, NY

Pinned Repositories

appyter
jinja2-enabled jupyter notebooks
Language:Python35 8 896
appyter-catalog
A catalog of appyter notebooks
Language:Jupyter Notebook35 5 12744
archs4
ARCHS4 RNA-seq processing scripts and web server pages.
Language:JavaScript54 8 4210
biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Language:HTML110 9 10830
biojupies-plugins
User-submitted RNA-seq data analysis tools for BioJupies.
Language:Python19 3 2613
blitzgsea
Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for accurate p-value estimation.
Language:Jupyter Notebook41 6 279
clustergrammer
An interactive heatmap visualization built using D3.js
Language:JavaScript232 24 4685
clustergrammer-widget
The Clustergrammer interactive Jupyter notebook widget
Language:Jupyter Notebook48 20 1427
HarmonizomePythonScripts
Language:Jupyter Notebook22 18 010
Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Language:Jupyter Notebook102 22 661

Ma'ayan Lab's Repositories

MaayanLab/biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
Language:HTML110 9 10830
MaayanLab/appyter-catalog
A catalog of appyter notebooks
Language:Jupyter Notebook35 5 12744
MaayanLab/HarmonizomePythonScripts
Language:Jupyter Notebook22 18 010
MaayanLab/archs4py
Python package to load and query ARCHS4 data
Language:Python15 6 23
MaayanLab/Playbook-Workflow-Builder
A repository for the Playbook Workflow Builder project.
Language:TypeScript11 2 15318
MaayanLab/FAIRshake
Language:HTML10 11 1456
MaayanLab/rummagene
Language:Python9 4 543
MaayanLab/Gene-Knowledge-Graph
Language:JavaScript7 4 3211
MaayanLab/EnrichrPythonScripts
Python Jupyter notebooks for Enrichr species databases
Language:Jupyter Notebook3 5 8
MaayanLab/rummageo
Language:Jupyter Notebook2 1 18
MaayanLab/PFOCRummage
Language:PLpgSQL1
MaayanLab/DRC-Portals
Language:TypeScript00
MaayanLab/GeneSetCart
Language:TypeScript0 2 680
MaayanLab/archs4dx
Language:JavaScript2 21
MaayanLab/ChEA-KG
Demo of how to build a transcription factor KG using the KG UI
Language:Jupyter Notebook0 0
MaayanLab/D2H2-site
Language:HTML3 110
MaayanLab/datacrossways
Launcher of data portal using the flask API and React fronted
Language:Python4 18
MaayanLab/datacrosswaysarchs4
Language:Python
MaayanLab/datadistillery-kg
Language:Jupyter Notebook4 3
MaayanLab/Enrichr-Viz-Appyter
Appyter for enrichr canvases, scatter plots, and Manhattan plots
Language:Jupyter Notebook6 102
MaayanLab/HarmonizomeKG
KnowledgeGraphDemoNia
Language:Jupyter Notebook0 0
MaayanLab/hypothesispage
Simple hypothesis page, much simpler just to show PrismExp results
Language:Jupyter Notebook3 0
MaayanLab/lncRNAlyzr-issues
A repo to report issues related the lncRNAlyzr app
MaayanLab/Multicore-TSNE
Parallel t-SNE implementation with Python and Torch wrappers.
Language:C++2 0
MaayanLab/nbviewer
nbconvert as a web service: Render Jupyter Notebooks as static web pages
Language:Python0 0
MaayanLab/postgrest-drs
A PostgREST powered DRS server
Language:PLpgSQL
MaayanLab/proxy
A convenient and generic proxy image
Language:Shell3 01
MaayanLab/RummageneXRummaGEO
Language:HTML
MaayanLab/speedrichr
Language:Java2 12
MaayanLab/TargetRanger
Language:JavaScript3 7