normalizeBatch target batch?
Closed this issue · 3 comments
pegahsafa commented
Is there any way to choose a "target batch" when applying the normalizeBatch function, so as to align landmarks to a particular batch? And is it possible to supply any of the flowStats implementation arguments such as bandwidth for density estimation?
Thanks
LTLA commented
Yes, this could definitely be done. I'll see if I can add these features over the coming week.
pegahsafa commented
Thank you! One additional suggestion--the ability to choose a subset of markers in the flowSet/matrix to be normalized would save some extra code.
LTLA commented
- You can now specify the target batch via
target
. - You can now pass arguments to
flowStats::warpSet
via...
. - You can now specify the markers of interest via
markers=
.
However, two things to note:
- I haven't tested any of these features (even if they are syntatically valid, or if the package builds!) because flowWorkspace is not installing on my machine - I will need to check why.
- Commits will be to https://github.com/MarioniLab/cydar, this repository is now archived.