MartinLoza

MartinLoza's Stars

• google-deepmind/deepmind-research

  This repository contains implementations and illustrative code to accompany DeepMind publications

  Language:Jupyter Notebook13.1k3253212.6k

• lmcinnes/umap

  Uniform Manifold Approximation and Projection

  Language:Python7.3k127786798

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.1k24923961

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k737.9k902

• scverse/scanpy

  Single-cell analysis in Python. Scales to >1M cells.

  Language:Python1.9k511.7k595

• immunogenomics/harmony

  Fast, sensitive and accurate integration of single-cell data with Harmony

  Language:R5122721998

• brianhie/scanorama

  Panoramic stitching of single cell data

  Language:Python26069248

• Oshlack/splatter

  Simple simulation of single-cell RNA sequencing data

  Language:R213615056

• broadinstitute/ABC-Enhancer-Gene-Prediction

  Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

  Language:Python199149959

• alexisvdb/singleCellHaystack

  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

  Language:R76589

• 4dn-dcic/hic2cool

  Lightweight converter between hic and cool contact matrices.

  Language:Python6310417

• hms-dbmi/3d-genome-processing-tutorial

  A 3D genome data processing tutorial for ISMB/ECCB 2017

  Language:Jupyter Notebook481409

• cran/mclust

  :exclamation: This is a read-only mirror of the CRAN R package repository. mclust — Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation. Homepage: https://mclust-org.github.io/mclust/

  Language:R205018

• MartinLoza/Canek

  Unbiased integration of single cell transcriptomes.

  Language:R52131