brianhie/scanorama

Issues

• batch correction in label transfer

  #163 opened 2 months ago by Li-ZhiD
  0

• Issue

  #162 opened 3 months ago by sdhbiusdgb
  0

• Data sets must be numpy array or scipy.sparse.csr_matrix, received type <class 'anndata._core.views.SparseCSCView'>.

  #159 opened 7 months ago by zczali4403
  1

• alignment scores outpout

  #160 opened 4 months ago by prubbens
  1

• The tutorial address has changed

  #158 opened 7 months ago by zczali4403
  1

• Memory not mapped

  #157 opened 7 months ago by AmosFong1
  0

• "negative dimensions are not allowed" when integrating large dataset

  #147 opened a year ago by aterceros
  1

• Broken tutorial link

  #156 opened 8 months ago by Xiaohan0416
  0

• Error when taking the union of genes

  #155 opened 8 months ago by brianhie
  0

• Order of Samples leads to different expression data after Scanorama normalization

  #149 opened a year ago by jeffpkamp
  1

• Kernel dies with 500GB memory

  #153 opened 10 months ago by kotr98
  2

• scanorama with reticulate - ERROR: Data sets must be numpy array or scipy.sparse.csr_matrix, received type <class 'str'>.

  #141 opened 2 years ago by lucygarner
  2

• Running Scanorama in parallel with Reticulate

  #146 opened a year ago by weshorton
  0

• Can we use it on several daatsets for which we're not sure about the normalization

  #145 opened 2 years ago by Sophon-0
  0

• module 'scanorama' has no attribute

  #144 opened 2 years ago by ChiaraCaprioli
  0

• Can scanorama.correct() be used on raw data for batch correction

  #142 opened 2 years ago by tbrunetti
  1

• scanorama from this repo vs scanpy external

  #140 opened 2 years ago by mortunco
  0

• Data sets must be numpy array or scipy.sparse.csr_matrix, received type <class 'scipy.sparse._csc.csc_matrix'>.

  #139 opened 2 years ago by Jiayi-Zheng
  1

• confusion about the calculation about KNN

  #138 opened 2 years ago by yuxiaokang-source
  0

• Much larger element cout in output matrix

  #126 opened 2 years ago by rvernica
  0

• Can I guide the alignment to be performed by scanorama?

  #122 opened 2 years ago by antonioggsousa
  0

• Restarting kernel...

  #120 opened 3 years ago by auesro
  0

• Scanpy's external API linkage is broken

  #118 opened 3 years ago by gangcai
  1

• expression distribution of genes in different clusters

  #117 opened 3 years ago by yihancc
  0

• Interval tree version bump?

  #115 opened 3 years ago by ivirshup
  2

• log-normalized or raw gene expression counts as input to Scanorama

  #112 opened 3 years ago by antonioggsousa
  1

• cannot unpack non-iterable NoneType object

  #111 opened 3 years ago by brianpenghe
  2

• NameError: name 'exit' is not defined. when integrating

  #110 opened 3 years ago by brianpenghe
  1

• Cell cycle regress before run scanorama?

  #108 opened 3 years ago by Zifeng-L
  1

• IndexError('index (%d) out of range' % max_indx)

  #106 opened 3 years ago by yafeng
  1

• Problem importing Scanorama: dependency sklearn.externals.six

  #100 opened 3 years ago by auesro
  4

• Extracting mutual nearest neighbors

  #101 opened 3 years ago by SNRNS
  1

• The integrated showing error

  #93 opened 3 years ago by honghh2018
  1

• np.concatenate is taking long time and using very high memory

  #92 opened 3 years ago by galib36
  3

• scanorama loading in R

  #88 opened 3 years ago by gmoore5
  0

• Illegal instruction (core dumped) on HPC cluster

  #73 opened 3 years ago by syouligan
  10

• About the output values?

  #79 opened 3 years ago by OnlyBelter
  3

• about batch correction in CTRL and STIM

  #84 opened 3 years ago by tanasa
  2

• Unable to get results

  #83 opened 4 years ago by Zhaohui-Ruan
  2

• about the data after integrarion

  #82 opened 4 years ago by dongzuoyk
  3

• Deprecation Warning Due to Numpy

  #81 opened 4 years ago by axelalmet
  2

• Integration of CITEseq data: Use Scanorama with ADT surface marker?

  #80 opened 4 years ago by jkniffka
  7

• Reticulate

  #78 opened 4 years ago by connorhknight
  2

• BLAS/LAPACK routine 'DLASWP' gave error code -6

  #76 opened 4 years ago by MagpiePKU
  1

• Recover Gene/Feature Loadings from the computed PCA (SC) for downstream analysis?

  #75 opened 4 years ago by Mochikris
  1

• scanorama_batch

  #74 opened 4 years ago by scheln
  0

• How to run different datasets through Scanorama?

  #72 opened 4 years ago by stevedough123
  1

• Adding new dataset into previously integrated datasets

  #70 opened 4 years ago by smgroves
  2

• failed in Integrating 1 million cells

  #69 opened 4 years ago by jhu99
  3

• Does scanorama require scaled data or not?

  #68 opened 4 years ago by salwanbutrus
  1