Pinned Repositories
efficient-evolution
Efficient evolution from protein language models
evolocity
Evolutionary velocity with protein language models
geosketch
Geometry-preserving random sampling
mutational-semantics-neurips2020
Learning mutational semantics
scanorama
Panoramic stitching of single cell data
secure-dti
Realizing private and practical pharmacological collaboration
trajectorama
Multi-study integration of cellular trajectories
uncertainty
Learning with uncertainty for biological discovery and design
viral-mutation
Language modeling of viral evolution
evo
Biological foundation modeling from molecular to genome scale
brianhie's Repositories
brianhie/scanorama
Panoramic stitching of single cell data
brianhie/efficient-evolution
Efficient evolution from protein language models
brianhie/viral-mutation
Language modeling of viral evolution
brianhie/evolocity
Evolutionary velocity with protein language models
brianhie/geosketch
Geometry-preserving random sampling
brianhie/uncertainty
Learning with uncertainty for biological discovery and design
brianhie/trajectorama
Multi-study integration of cellular trajectories
brianhie/secure-dti
Realizing private and practical pharmacological collaboration
brianhie/mutational-semantics-neurips2020
Learning mutational semantics
brianhie/brianhie.github.com
brianhie/flash-attention
Fast and memory-efficient exact attention
brianhie/DGraphDTA
a novel DTA predition method using graph neural network
brianhie/evovdss
brianhie/orf-fold-website
brianhie/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
brianhie/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
brianhie/schema
Framework for integrating heterogeneous modalities of data
brianhie/scib
Benchmarking analysis of data integration tools
brianhie/causaldag
Python package for the creation, manipulation, and learning of Causal DAGs
brianhie/causaldag_examples
Example usage of https://github.com/uhlerlab/causaldag
brianhie/CellBench_data
This contains the dataset for comparing scRNA-seq analysis methods
brianhie/ggb
Graph-Guided Banding of the Covariance Matrix
brianhie/icml18-jtnn
Junction Tree Variational Autoencoder for Molecular Graph Generation (ICML 2018)
brianhie/led-website
brianhie/louvain-igraph
Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.
brianhie/Megatron-LM
Ongoing research training transformer models at scale
brianhie/prosodic
PROSODIC: a metrical-phonological parser, written in Python. For English and Finnish, with flexible language support.
brianhie/stripedhyena
Repository for StripedHyena-7B, a state-of-the-art beyond Transformer model
brianhie/syngenome
brianhie/visualize