Mitchel-collab

Mitchel-collab's Stars

• datasciencemasters/go

  The Open Source Data Science Masters

  25.1k1.6k566.2k

• mml-book/mml-book.github.io

  Companion webpage to the book "Mathematics For Machine Learning"

  Language:Jupyter Notebook13.4k4797762.5k

• deepchem/deepchem

  Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

  Language:Python5.6k1441.7k1.7k

• Nyandwi/machine_learning_complete

  A comprehensive machine learning repository containing 30+ notebooks on different concepts, algorithms and techniques.

  Language:Jupyter Notebook4.7k875771

• crazyhottommy/getting-started-with-genomics-tools-and-resources

  Unix, R and python tools for genomics and data science

  Language:Shell1.2k8711351

• crazyhottommy/RNA-seq-analysis

  RNAseq analysis notes from Ming Tang

  Language:Python952787300

• crazyhottommy/scRNAseq-analysis-notes

  scRNAseq analysis notes from Ming Tang

  660460162

• mdozmorov/MachineLearning_notes

  Machine learning and deep learning resources

  51912175

• pachterlab/BI-BE-CS-183-2023

  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

  Language:Jupyter Notebook4609372

• BenLangmead/ads1-notebooks

  Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

  375553367

• BenLangmead/ads1-slides

  Slides for Algorithms for DNA Sequencing Coursera class

  320351222

• tiagoantao/bioinf-python

  Python for Bioinformatics

  Language:OpenEdge ABL249296105

• cxli233/SimpleTidy_GeneCoEx

  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses

  1957427

• timoast/sinto

  Tools for single-cell data processing

  Language:Python11926325

• mdozmorov/TCGAsurvival

  Scripts to analyze TCGA data

  Language:R115101742

• ropensci/UCSCXenaTools

  :package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/

  Language:R10654412

• kvittingseerup/IsoformSwitchAnalyzeR

  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

  Language:R103423718

• mdozmorov/Cancer_notes

  A continually expanding collection of cancer genomics notes and data

  1019030

• shubhamjha97/hierarchical-clustering

  A Python implementation of divisive and hierarchical clustering algorithms. The algorithms were tested on the Human Gene DNA Sequence dataset and dendrograms were plotted.

  Language:Python813131

• anabiman/pygran

  A DEM toolkit for rapid simulation & quantitative analysis of granular systems

  Language:Python7571016

• chenlabgccri/CancerTypePrediction

  This is the repository for paper titled as "Convolutional neural network models for cancer type prediction based on gene expression".

  Language:Python452132

• carpentries-incubator/bioc-intro

  Bioconductor data science introduction

  Language:R27135329

• DIYtranscriptomics/DIYtranscriptomics.github.io

  The website for a semester-long 'do-it-yourself' (DIY) transcriptomics course

  Language:HTML23307

• JamesMarshall31/design-of-experiments

  A Python Package for intuitive design of experiments with user-friendly analysis of results. The aim is for this package to rival the DOE capabilities of commercial software such as JMP. Currently designs and analysis will be more geared towards investigations following the Response Surface Methodology.

  Language:Python22217

• rvlenth/rsm

  R package for response-surface methodology

  Language:R186211

• lcolladotor/cshl_rstats_genome_scale_2023

  CSHL Statistical Analysis of Genome Scale Data 2023

  Language:R6200

• chenlabgccri/DeepDR

  Predicting drug response of tumors from integrated genomic profiles by deep neural networks

  Language:Python51

• vappiah/Transcriptomics

  Language:Shell51113

• DarkoMedin/cancerclassifier_L

  Exemplar project on how to create leukemia cancer classifier using Python and gene expression data via LGBM.

  Language:Jupyter Notebook3300

• shirotak/GS-PRACTICE

  Tumor genomic subtyping tool based on mutational signautures

  Language:Python1