Mouse-Imaging-Centre/RMINC
Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, Jim Nikelski and Matthijs van Eede. Some additional information can be found here:
RNOASSERTION
Issues
- 1
runRMINCTestbed() failing
#321 opened by lgazdzin - 7
Problem installing RMINC on Mac
#320 opened by christianlimberger - 5
Can't install RMINC on Ubuntu
#314 opened by guilhermepovala - 1
R 4.x support
#296 opened by bcdarwin - 0
- 0
F-statistics not working with mincRandomize
#318 opened by rwickens - 2
How to run test suite
#317 opened by rwickens - 1
mincGetWorldVoxel is really mincGetWorldVoxelNeighbour in disguise, but only sometimes
#316 opened by yohanyee - 2
Move test data to a release attachment
#313 opened by gdevenyi - 4
Installation with R 3.6.x
#306 opened by nmskhan - 0
RMINC breaks parallel::parSapply() when using parallel::makeForkCluster() in R 4.1.3
#310 opened by dnmacdon - 0
- 2
addVolumesToHierarchy is too specific
#308 opened by bcdarwin - 0
support MINC API features like `dimorder`
#307 opened by bcdarwin - 0
When executing in parallel, vertexEffectSize() fails when the formula in the prior vertexLm() call is stored in a variable.
#305 opened by dnmacdon - 0
Problem running makeMICeDefsHierachical() function
#304 opened by mirpie - 1
`mincEffectSize` returns an object of class `matrix`
#303 opened by bcdarwin - 9
Possible memory leak in mincWriteVolume
#302 opened by gdevenyi - 4
mincLmer will converge when specifying summary_type = "fixef", yet will not when summary_type = "ranef" or "both"
#298 opened by Jeanne-Mance - 11
Can't run pMincApply example code: object 'fun' of mode 'function' was not found
#299 opened by gdevenyi - 2
mincGetVoxel iterator?
#301 opened by gdevenyi - 0
Examples all fail due to getRMINCTestData() creating a random subdirectory now
#300 opened by gdevenyi - 13
Installation error on Mac
#297 opened by Marina-Blmz - 0
libz didn't work
#292 opened by anummers - 0
[DOC] Fix the matrix error message in anatLm
#295 opened by cfhammill - 14
[Critical] Bug in anatLm with `scale`d variables
#294 opened by cfhammill - 0
[feature request] implement E-value?
#293 opened by bcdarwin - 4
Arguments did not work
#291 opened by anummers - 2
anatCreateVolume fails for left/right labels, only works for symmetric labels
#267 opened by gdevenyi - 0
flaky test_mincTFCE.R
#290 opened by bcdarwin - 0
- 1
*lmer summary_type function
#286 opened by gdevenyi - 0
- 1
get a DOI for RMINC in the absence of a paper?
#287 opened by bcdarwin - 5
- 8
Allow forcing of libminc build
#283 opened by gdevenyi - 9
anatLm doesn't allow for NAs in depdendent variable
#280 opened by gdevenyi - 0
Single column anatomy matrices break `anatLm`
#282 opened by cfhammill - 1
- 2
- 8
Revamp travis builds
#273 opened by cfhammill - 12
mincTable or equivalent to vertexTable?
#271 opened by gdevenyi - 1
shiny FDR interface labels are incorrect
#270 opened by gdevenyi - 0
Testing of CIVET related functions
#275 opened by cfhammill - 0
3D plots broken in recent versions of rgl
#274 opened by cfhammill - 7
Accept test data location when building package
#272 opened by bcdarwin - 0
add check for two-sided formula in anatLm
#269 opened by cfhammill - 1
makeMICeDefsHierachical() returns incorrect (at best extremely misleading) label attribute
#268 opened by nzxwang - 0
anatCreateVolume doesn't create a mincArray
#266 opened by gdevenyi - 0