NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

Sweden

Pinned Repositories

AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
Language:Perl527 45 35362
development-guidelines
Development guidlines for software within NBIS.
18 41 309
EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
Language:Python62 39 6816
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
Language:HTML221 62 3106
GAAS
Genome Assembly and Annotation Service code
Language:Perl214 50 3647
IgDiscover-legacy
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
Language:Python17 44 11410
MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
Language:C252 46 22782
workshop-reproducible-research
NBIS/Elixir course: Tools for Reproducible Research
Language:HTML65 40 14233
workshop-scRNAseq
Single cell RNA sequencing analysis course
Language:HTML207 45 9102
workshop_omics_integration
Workshop in omics integration and systems biology
Language:HTML78 38 3037

NBIS - National Bioinformatics Infrastructure Sweden's Repositories

NBISweden/AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
Language:Perl527 45 35362
NBISweden/workshop-scRNAseq
Single cell RNA sequencing analysis course
Language:HTML207 45 9102
NBISweden/workshop-reproducible-research
NBIS/Elixir course: Tools for Reproducible Research
Language:HTML65 40 14233
NBISweden/GenErode
GitHub repository for GenErode, a Snakemake pipeline for the analysis of whole-genome sequencing data from historical and modern samples to study patterns of genome erosion.
Language:Python25 10 677
NBISweden/workshop-mlbiostatistics
Language:HTML15 37 48
NBISweden/workshop-ngsintro
Workshop • Intro to Bioinformatics using NGS data • 5 days
Language:HTML15 43 07
NBISweden/Earth-Biogenome-Project-pilot
An assembly workflow for analysing data in the Earth Biogenome Project pilot project.
Language:Nextflow14 36 8111
NBISweden/workshop-python
8 40 1211
NBISweden/swefreq
Swedish Frequency resource for genomics website
Language:Python7 33 2121
NBISweden/sda-cli
User command line interface for the SDA
Language:Go6 10 1541
NBISweden/data-submission-documentation
Documentation for data submissions from life science research in public repositories
Language:Python3 8 00
NBISweden/sda-services-backup
Language:Go2 34 261
NBISweden/workshop-data-visualization-r
Materials for NBIS workshop on data visulalization
Language:HTML2 5 23
NBISweden/ceph_utils
Various scripts used to setup and interact with a Ceph cluster
Language:Shell1 5 0
NBISweden/urdr
Timelogging system of NBIS
Language:TypeScript0 6 3471
NBISweden/bacmet
NBISweden/bp-sweden-web
Website for BigPicture Sweden
Language:SCSS
NBISweden/elixir_evaluation_evaluation
An evaluation of the ELIXIR course evaluation
Language:Shell
NBISweden/ML4Life
Language:SCSS
NBISweden/module-organising-data-dm-practices
Language:Ruby36 12
NBISweden/NanoSeq
Analysis software for Nanorate Sequencing (NanoSeq) experiments
Language:C++
NBISweden/scQC
Single cell QC analysis pipeline
Language:HTML
NBISweden/sda-uppmax-integration
Language:Go13 5
NBISweden/sdafs
FUSE file system driver for the sensitive data archive
Language:Go
NBISweden/sll_vr_reporting_utils
Scripts used to dig out the data needed for the SciLifeLab and VR yearly reports.
Language:Python6 01
NBISweden/strobealign-evaluation
Language:Python7 0
NBISweden/teaching_literature_club
NBIS' teaching literature club
Language:Shell6 31
NBISweden/vector-oligo-search
Language:Python10 101
NBISweden/workshop-scrnaseq-2024
Language:HTML
NBISweden/workshop-scRNAseq-devel
Single cell RNA sequencing analysis course
Language:HTML1 3