NBISweden/IgDiscover-legacy

Issues

• New IgDiscover repository

  #124 opened a year ago by marcelm
  0

• Clean up configuration

  #74 opened a year ago by marcelm
  0

• Can we use sequence qualities?

  #75 opened a year ago by marcelm
  0

• Increase required V coverage

  #95 opened a year ago by marcelm
  0

• germlinefilter: Remove --minimum-db-diff

  #96 opened a year ago by marcelm
  1

• What is CDR3_shared_ratio

  #98 opened a year ago by carollia
  2

• Parse Flash stats fails

  #102 opened a year ago by souptonuts
  3

• Where is the complete germline DataBase?

  #105 opened a year ago by CollinJ0
  1

• Complain if the input reads contain non-nucleotide characters/spaces

  #114 opened a year ago by bridgelan
  10

• error about Microsoft Visual C++ on installation

  #115 opened a year ago by zenonisole
  1

• error in_rule_read_length_histogram

  #122 opened a year ago by Jyoung-0108
  11

• trouble installing with conda

  #123 opened a year ago by john-dingus
  2

• IgDiscover crashes with pandas 2.0.0

  #121 opened 2 years ago by ressy
  5

• Cannot install IgDiscover on M1 MacBook Pro

  #120 opened 2 years ago by kllenart
  3

• Give sensible error message when running init without DISPLAY

  #108 opened 3 years ago by marcelm
  0

• Solving environment: failed

  #116 opened 3 years ago by pursellta
  2

• IgBlast error

  #112 opened 4 years ago by isnapkov
  1

• length of CDR1 region is not divisible by three

  #113 opened 4 years ago by williamdlees
  3

• Error running against the test data set

  #111 opened 4 years ago by williamdlees
  3

• IgDiscover crashes if no arguments are given

  #110 opened 4 years ago by ressy
  1

• Possibly get rid of sqt dependency

  #85 opened 4 years ago by marcelm
  0

• snakemake error

  #109 opened 4 years ago by kokomutai
  12

• Error: No V genes were discovered in this iteration

  #103 opened 5 years ago by LandiMi2
  11

• Snakemake workflow problem with symlinks and temp()

  #107 opened 5 years ago by ressy
  4

• Error in rule read_length_histogram

  #106 opened 5 years ago by ayeletperes
  3

• Docs may need updating for J discovery

  #104 opened 5 years ago by ressy
  2

• Test dataset processing fails when using FLASH end-pairing

  #101 opened 5 years ago by souptonuts
  2

• IgBLAST mangles sequence identifiers that are accessions

  #100 opened 5 years ago by carollia
  3

• How do I tell if IgDiscover has hung?

  #99 opened 5 years ago by scharch
  9

• Failure to identify V genes

  #97 opened 5 years ago by carollia
  8

• clusterplot produces IndexError

  #78 opened 7 years ago by marcelm
  4

• Remove differences setting in germline filters

  #87 opened 6 years ago by marcelm
  1

• Increase required pigz version to 2.4

  #88 opened 6 years ago by marcelm
  1

• Running light chain sequences

  #92 opened 6 years ago by ayeletperes
  4

• SyntaxError: Not all output, log and benchmark files of rule trim_forward_primers contain the same wildcards

  #93 opened 6 years ago by marcelm
  0

• "nofinal" does not work

  #86 opened 6 years ago by marcelm
  0

• Collect more statistics

  #84 opened 6 years ago by marcelm
  2

• Set the number of thread and disbale .cache

  #83 opened 6 years ago by prod-feng
  2

• Error during J-discovery in IgDiscover v0.9

  #81 opened 7 years ago by willbradshaw
  7

• Make final iteration optional

  #70 opened 7 years ago by marcelm
  3

• Error in running matplotlib

  #82 opened 7 years ago by tprodanov
  3

• AttributeError: 'FigureCanvasPdf' object has no attribute 'get_renderer'

  #80 opened 7 years ago by rungitta
  5

• Problems installing IgDiscover development in a new Ubuntu 16.04

  #79 opened 7 years ago by NestorVB
  2

• Investigate regression in clusterplot with seaborn 0.8

  #77 opened 7 years ago by marcelm
  1

• Add an option for not using discovered J genes in subsequent iterations

  #76 opened 7 years ago by marcelm
  0

• Make computation of Ds_exact configurable

  #73 opened 7 years ago by marcelm
  0

• Add a column with number of barcodes to candidates list

  #69 opened 7 years ago by marcelm
  0

• Make it possible to not collapse by barcode

  #68 opened 7 years ago by marcelm
  0

• Merge parse and igblast scripts

  #71 opened 8 years ago by marcelm
  1

• The filtering step uses too much memory

  #72 opened 8 years ago by marcelm
  1