NBIS - National Bioinformatics Infrastructure Sweden
NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
Sweden
Pinned Repositories
AGAT
Another Gtf/Gff Analysis Toolkit
development-guidelines
Development guidlines for software within NBIS.
EMBLmyGFF3
An efficient way to convert gff3 annotation files into EMBL format ready to submit.
excelerate-scRNAseq
Single RNA-seq data analysis with R (Finland, May, 2019)
GAAS
Genome Assembly and Annotation Service code
IgDiscover-legacy
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
MrBayes
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
workshop-reproducible-research
NBIS/Elixir course: Tools for Reproducible Research
workshop-scRNAseq
Single cell RNA sequencing analysis course
workshop_omics_integration
Workshop in omics integration and systems biology
NBIS - National Bioinformatics Infrastructure Sweden's Repositories
NBISweden/workshop-reproducible-research
NBIS/Elixir course: Tools for Reproducible Research
NBISweden/workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days
NBISweden/workshop-spatial
NBISweden/a_johansson_2020
Åsa Johansson partner project 2020
NBISweden/homepage_rshiny.nbis.se
homepage for rshiny.nbis.se
NBISweden/raukr-2023
NBIS Summer School • Advanced R for Bioinformatics
NBISweden/vcf2cytosure
Convert VCF with structural variations to CytoSure format
NBISweden/EGA-SE-user-docs
Repository with all the information and documents for the the users of ega-se
NBISweden/enrichplot_emapplot
Visualization of Functional Enrichment Result
NBISweden/predictprotein-webserver-pconsc3
A django based web-server platform suitable for schedualling time consuming jobs only at the remote computational node
NBISweden/workshop-kmer-analysis
Introduction into kmer analysis
NBISweden/datasets.bp.nbis.se
Demo website for Bigpicture dataset description pages.
NBISweden/fega-sweden-helpdesk-generate-files
A Snakelike workflow to generate unique FASTQ files
NBISweden/htsget-rs
Rust htsget server
NBISweden/LTS-BiodiversityAnalysisCAO
Code repository for the support project P_Snoeijs-Leijonmalm_2205
NBISweden/LTS-BuildGenomesDatabaseCAO
Download and build Bowtie2 indexes from animal genomes.
NBISweden/mimir
Self-hosted UI Frontend for ChatGPT API with User Support & Google Auth Login
NBISweden/mimir-server
A ChatGPT UI server based on the Django framework.
NBISweden/pgip-data
Population genomics in practice - data repository
NBISweden/pgip-jlite
PGIP jupyterlite instance
NBISweden/phemulator
Phemulator tool for simulating phenotypes based on genotypes
NBISweden/predictprotein-webserver-boctopus2
Web-server for BOCTOPUS2 - a predictor for topology of transmembrane beta-barrel proteins
NBISweden/predictprotein-webserver-prodres
Web server for PRODRES: Fast protein searches using a protein domain-reduced database.
NBISweden/predictprotein-webserver-proq3
NBISweden/predictprotein-webserver-scampi2
Web server for SCAMPI2
NBISweden/rapid_curation
Set of pipelines for assembly curation purposes
NBISweden/uppmax_executables
Utilities to check which libraries are missing at Dardel.
NBISweden/uppmax_to_dardel
Testing ground for transfering the UPPMAX software environment to Dardel.
NBISweden/wabi-wiki-redirect
Example of how the wabi-wiki redirect is set up
NBISweden/workshop-reproducible-research-binder_example
A repository showing how to use Binder with Jupyter notebooks