Nuturetree

Nuturetree's Stars

• RipplePiam/MobaXterm-Chinese-Simplified

  MobaXterm 简体中文汉化版🌏🖥🖥🖥 【💌慢工精心制作，"提示"也汉化💻】 【😍控件布局精细调整】

  4.4k327

• tmlagler/hicACT

  hicACT

  Language:R1

• ycm-core/ycmd

  A code-completion & code-comprehension server

  Language:C++1.7k770

• nservant/HiC-Pro

  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

  Language:Python390181

• Tian-Dechao/diffDomain

  DiffDomain is a statistically sound method for detecting differential TADs between conditions

  Language:Python164

• jesselau76/ebook-GPT-translator

  Enjoy reading with your favorite style.

  Language:Python1.7k210

• krassowski/complex-upset

  A library for creating complex UpSet plots with ggplot2 geoms

  Language:Jupyter Notebook47429

• YosefLab/ImpulseDE2

  Language:R3610

• junjunlab/ClusterGVis

  One-step to Cluster and Visualize Gene Expression Matrix

  Language:R25725

• XiaoTaoWang/HiCPeaks

  A Python implementation for BH-FDR and HiCCUPS

  Language:Python439

• tariks/peakachu

  Genome-wide contact analysis using sklearn

  Language:Python6010

• CSOgroup/CALDER2

  CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hierarchical organization and obtain sub-compartments; (3) compute nested sub-domains within each chromatin domain from short-range contacts.

  Language:R182

• FunctionLab/sei-framework

  code to run sei and obtain sei and sequence class predictions

  Language:Python936

• ArtemLuzhin/LASCA_pipeline

  Loops And Significant Contacts Annotation pipeline (LASCA_pipeline) is a flexible tool to annotate loops and significant interactions in HiC data.

  Language:Python7

• Bio-protocol/TAD-and-loop-identification-workflows

  Language:R74

• vaquerizaslab/fanc

  FAN-C: Framework for the ANalysis of C-like data

  Language:Python10814

• noriakis/CBNplot

  Bayesian network plot for the enrichment analysis results

  Language:R6211

• erbon7/lemon-tree

  Module Network Inference software

  Language:Java99

• dekkerlab/cworld-dekker

  perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)

  Language:Perl6520

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  555125

• WWXkenmo/Bioinfor_researchers_atlas

  463

• Wechat-ggGitHub/Awesome-GitHub-Repo

  收集整理 GitHub 上高质量、有趣的开源项目。

  15.5k1.7k

• ay-lab/mustache

  Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

  Language:Python6411

• ENCODE-DCC/chip-seq-pipeline

  ENCODE Uniform processing pipeline for ChIP-seq

  Language:Python12153

• aidenlab/juicer

  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

  Language:Shell421183