Pinned Repositories
flowcraft
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
flowcraft-webapp
FlowCraft companion web application
ElConcatenero
ElConcatenero3
ElConcatenero
innuca-nf
A nextflow implementation of INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search
Silva2014_RustPhylogenomics
The set of scripts used in Silva et al. 2014 "Genomic patterns of positive selection at the origin of rust fungi"
SNPair_LD
Calculates pairwise SNP linkage disequilibirum from a VCF file
templates
Set of templates for nextflow and general usage
TriFusion
Streamlining phylogenomic data gathering, processing and visualization
vcf2PCA
Principal component analysis of SNP data with interactive plot
ODiogoSilva's Repositories
ODiogoSilva/Silva2014_RustPhylogenomics
The set of scripts used in Silva et al. 2014 "Genomic patterns of positive selection at the origin of rust fungi"
ODiogoSilva/ElConcatenero3
ElConcatenero
ODiogoSilva/SNPair_LD
Calculates pairwise SNP linkage disequilibirum from a VCF file
ODiogoSilva/blast_wrapper
ODiogoSilva/Collapse
ODiogoSilva/Gcoder
ODiogoSilva/python101
Python 101 course slides
ODiogoSilva/server-tools
Collection of compiled NGS tools for server distribution
ODiogoSilva/beast_utils
Tools to deal with the BEAST xml input files
ODiogoSilva/bionode-watermill-tutorial
This is a tutorial for bionode-watermill
ODiogoSilva/blast_triage
ODiogoSilva/interactive_structure
Interactive fastStructure plots
ODiogoSilva/ipyrad
Interactive assembly and analysis of RAD-seq data sets
ODiogoSilva/kivy
Open source Python framework for creating NUI applications, running on Windows, Linux, OS X, Android and iOS
ODiogoSilva/mmseqs2
MMseqs2.0: ultra fast and sensitive search and clustering suite
ODiogoSilva/ODiogoSilva.github.io
ODiogoSilva/pAtlas
ODiogoSilva/shared_dump
ODiogoSilva/Structure_threader
A simple program to paralelize the runs of the "Structure" software.