OpenOmics/genome-seek

Issues

• Add GATK best practices sub-workflow for calling short germline variants

  #20 opened 6 months ago by skchronicles
  1

• Benchmark new GATK germline sub workflow for accuracy and precision

  #21 opened 7 months ago by skchronicles
  1

• Calling only -> no alignment

  #19 opened 10 months ago by dansteiert
  2

• Add option to run pipeline in WES-mode

  #16 opened a year ago by skchronicles
  0

• TODO: v1.0.0 Release

  #13 opened 2 years ago by skchronicles
  1

• Create somatic pipeline

  #11 opened a year ago by skchronicles
  1

• genome-seek cache error

  #14 opened 2 years ago by yingchen69
  6

• Benchmarking germline pipeline for accuracy and precision after completion

  #9 opened 3 years ago by skchronicles
  2

• Create documentation

  #8 opened 3 years ago by skchronicles
  1

• Add CI workflow for testing changes

  #10 opened 3 years ago by skchronicles
  1

• Add optional steps to skip qc and only call variants

  #6 opened 3 years ago by skchronicles
  1

• Add optional SV calling steps

  #5 opened 3 years ago by skchronicles
  1

• Add optional CNV calling steps

  #4 opened 3 years ago by skchronicles
  1

• Build docker image for OpenCRAVAT due to bug in mergesqlite sub command

  #7 opened 3 years ago by skchronicles
  1

• Create germline pipeline

  #3 opened 3 years ago by skchronicles
  1

• Create a new entry point to pipeline

  #2 opened 3 years ago by skchronicles
  1

• Create basic scaffold for project

  #1 opened 3 years ago by skchronicles
  1