Oshlack/necklace

Issues

• updating the beads in Necklace

  #19 opened 2 months ago by MDSharma
  0

• no decent genome annotation, how to run the software?

  #18 opened 2 years ago by joleneyue
  2

• groovy file modification

  #17 opened 2 years ago by joleneyue
  2

• FAILED at the beginning of pipeline

  #8 opened 3 years ago by Cesarihv
  1

• FAILED to construct

  #6 opened 3 years ago by MDSharma
  4

• stuck at merge_genome_annotation step

  #15 opened 3 years ago by stephanyfoster
  8

• conda related installation issue

  #16 opened 3 years ago by sid5427
  3

• test run hangs on bowtie2-align-s

  #14 opened 4 years ago by chelseaherdman
  9

• de novo assembly fasta, reads_R2 error

  #13 opened 5 years ago by stephanyfoster
  20

• errors during test dataset

  #12 opened 5 years ago by DomeJoyce
  5

• Add support for single end reads

  #11 opened 5 years ago by nadiadavidson
  1

• Add step to check that all files specified in config exist

  #10 opened 5 years ago by nadiadavidson
  0

• Switch blat with gmap for threading

  #9 opened 5 years ago by nadiadavidson
  0

• Installation-prob

  #5 opened 5 years ago by avrajit
  4

• Passing a genome-guided Trinity assembly to necklace

  #2 opened 5 years ago by flopezo
  5

• CPU count not passed to HISAT2

  #3 opened 5 years ago by acesnik
  3

• blat fails due to empty fasta records

  #7 opened 6 years ago by ctSkennerton
  2

• Full length Nanopore reads

  #1 opened 6 years ago by abayega
  1