PTRRupprecht
Neuroscience junior group leader. Calcium imaging, ephys, microscopy, data analysis. PhD with Rainer Friedrich. Postdoc with Fritjof Helmchen.
Brain Research InstituteZürich
Pinned Repositories
Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
Centripetal_propagation_astrocytes
Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
Calcium_imaging_and_temporal_dispersion
Analysis of temporal dispersion from calcium imaging data processed with a spike inference algorithm
Drawing-ROIs-without-GUI
Drawing ROIs with a non-graphical user interface
Ephys-data-analysis
Some scripts for electrophysiological data analysis (mainly Matlab)
GenHurst
Calculates the generalized Hurst exponent of a time series
Hodgkin-Huxley-CC-VC
The Hodgkin-Huxley neuron model, simulated both in current clamp and voltage clamp
Instrument-Control
Instrument Control for Microscopes and Accessories
Photon-yield-and-pulse-dispersion
Pulse dispersion, dielectric mirrors and fluorescence yield
Spikefinder-Elephant
Keras network for spike detection from calcium traces
PTRRupprecht's Repositories
PTRRupprecht/GenHurst
Calculates the generalized Hurst exponent of a time series
PTRRupprecht/Spikefinder-Elephant
Keras network for spike detection from calcium traces
PTRRupprecht/Instrument-Control
Instrument Control for Microscopes and Accessories
PTRRupprecht/Drawing-ROIs-without-GUI
Drawing ROIs with a non-graphical user interface
PTRRupprecht/Calcium_imaging_and_temporal_dispersion
Analysis of temporal dispersion from calcium imaging data processed with a spike inference algorithm
PTRRupprecht/Hodgkin-Huxley-CC-VC
The Hodgkin-Huxley neuron model, simulated both in current clamp and voltage clamp
PTRRupprecht/Ephys-data-analysis
Some scripts for electrophysiological data analysis (mainly Matlab)
PTRRupprecht/Matlab-Library-2016
Matlab Ca imaging data analysis library 2016
PTRRupprecht/Photon-yield-and-pulse-dispersion
Pulse dispersion, dielectric mirrors and fluorescence yield
PTRRupprecht/remote-z-scanning-ABCD-optics
ABCD optics analysis for remote z-scanning using Mathematica
PTRRupprecht/Spikefinder-Adaptive-Derivative
A simple model-based algorithm for the spikefinder competition
PTRRupprecht/Understanding-style-transfer
Using a pre-trained GoogLeNet and the Deep Dream technique to analyze Gram matrices
PTRRupprecht/A-lens-to-undistort-sinusoidal-scan-trajectories
A lens to undistort sinusoidal scan trajectories
PTRRupprecht/Basis-of-Feature-Spaces
Extracting and analyzing activations of the Inception network
PTRRupprecht/c2s
A toolbox for inferring spikes from calcium traces.
PTRRupprecht/Calculate-z-range-with-remote-ETL
Calculate the z-range using a remote ETL
PTRRupprecht/Cascade_test
Testing environment for CASCADE
PTRRupprecht/Cell_Detection
Python code for merging and refinement of detected neurons in large 3D stacks
PTRRupprecht/DLC-inferencespeed-benchmark
A database of inference speed benchmark results on various platforms and architectures
PTRRupprecht/fissa
A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
PTRRupprecht/LuigsAndNeumannSM5
A python class for communicating with the Luigs & Neumann SM-5 control box.
PTRRupprecht/MatlabDAQmx
DAQmx Examples using MATLAB
PTRRupprecht/spikefinder_analysis
Analysis code for the results of the spikefinder challenge
PTRRupprecht/stitch
A scalable implementation of WobblyStitcher for 3D microscopy images
PTRRupprecht/UQOAB
Unsupervised Quantification of Animal Behavior