Pinned Repositories
AMICI
Advanced Multilanguage Interface to CVODES and IDAS
Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
pyPESTO
python Parameter EStimation TOolbox
Pseudo-time-trajectory-of-single-cell-lipidomics
libpetab-python
Python package for working with PEtab files
PEtab
PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
nlopt
library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization