PeerHerholz/BIDSonym

Issues

• local variable 'T1_file' referenced before assignment

  #86 opened 4 months ago by hugofluhr
  1

• Cannot be executed from subfolder

  #85 opened 4 months ago by yarikoptic
  0

• Fresh warnings to tackle

  #84 opened 4 months ago by yarikoptic
  0

• crash in report_wf.plt_defaced when subjects have differing number of sessions

  #69 opened 2 years ago by BarnardVisionLab
  2

• Add -w | --work-dir option (and do not use temporary folder)?

  #82 opened 5 months ago by yarikoptic
  0

• Doesn't tolerate relative path to the bids dataset (works ok with full path)

  #28 opened 4 years ago by yarikoptic
  1

• Please provide new docker image

  #79 opened 9 months ago by yarikoptic
  2

• Please release 0.0.3

  #38 opened 9 months ago by yarikoptic
  2

• update bids validator

  #68 opened a year ago by Remi-Gau
  0

• Mismatch between T1 and T2 files

  #72 opened a year ago by vferat
  0

• Add MiDeFace as another defacing option (if its a good fit).

  #67 opened 2 years ago by rwblair
  0

• Version flag doesn't work and need to Update --deid options

  #64 opened 3 years ago by julfou81
  1

• root must own output for pydeface? -u $UID:$GID gets error

  #66 opened 3 years ago by dkp
  0

• Container is unfriendly to htcondor

  #65 opened 3 years ago by multiduplikator
  0

• .json sidecars mismatched

  #61 opened 3 years ago by zenkavi
  0

• allow any image to be defaced

  #19 opened 4 years ago by bpinsard
  10

• Pydeface writing permission error for python egg cache

  #59 opened 3 years ago by m-petersen
  5

• mridefacer removes given data

  #57 opened 3 years ago by tashrifbillah
  5

• improvements to installation documentation

  #54 opened 3 years ago by neuromusic
  1

• minor typos and errors in JOSS manuscript

  #53 opened 3 years ago by neuromusic
  1

• tests?

  #55 opened 3 years ago by neuromusic
  0

• bet fails to find data

  #36 opened 4 years ago by yarikoptic
  1

• AttributeError: 'list' object has no attribute 'keys'

  #51 opened 4 years ago by dmd
  3

• Deid not working

  #49 opened 4 years ago by araikes
  3

• visual reports not generated

  #20 opened 4 years ago by jbwexler
  4

• Sample report in the Outputs Document is Broken

  #44 opened 4 years ago by complexbrains
  1

• Bidsonym single session

  #40 opened 4 years ago by araikes
  1

• take some brain extraction as default?

  #34 opened 4 years ago by yarikoptic
  0

• Add option to skip BIDS validation

  #35 opened 4 years ago by yarikoptic
  2

• what to do with date information in nifti header?

  #41 opened 4 years ago by Remi-Gau
  1

• Bidsonym not running

  #39 opened 4 years ago by araikes
  3

• DataLad support

  #42 opened 4 years ago by PeerHerholz
  0

• add option to be able to run multiple defacers for the same source data

  #30 opened 4 years ago by yarikoptic
  1

• --version provides versioneer garbage instead of actual bidsonym version

  #29 opened 4 years ago by yarikoptic
  3

• read-only input files should not prevent the creation of output replacement

  #23 opened 4 years ago by yarikoptic
  28

• docker hub needs a tagged release

  #31 opened 4 years ago by yarikoptic
  1

• at least warn whenever incorrect/missing participant id is specified

  #26 opened 4 years ago by yarikoptic
  2

• Needs a refresher build? bids-validator is old 1.2.3 whenever 1.54 is current release

  #25 opened 4 years ago by yarikoptic
  2

• singularity run with pydeface fails due to TraitError from nipype

  #27 opened 4 years ago by yarikoptic
  1

• Link to SingularityHub to provide ready-to-use singularity container

  #24 opened 4 years ago by yarikoptic
  3

• T2w not defaced

  #21 opened 4 years ago by julfou81
  4

• InstitutionAddress is not deleted

  #18 opened 4 years ago by hcp4715
  3

• Add some tests/ci

  #12 opened 5 years ago by yarikoptic
  5

• blur data

  #16 opened 4 years ago by PeerHerholz
  1

• Add it to official bids-apps list

  #11 opened 4 years ago by yarikoptic
  4

• deepdefacer doesn't not work

  #22 opened 4 years ago by julfou81
  5

• submissions

  #15 opened 5 years ago by PeerHerholz
  0

• multimodal

  #14 opened 5 years ago by CPernet
  2

• anonymize / remove metadata

  #13 opened 5 years ago by PeerHerholz
  7

• PyBids error

  #17 opened 5 years ago by araikes
  5