neuromusic
Building things that matter. Open source, science, data science, and social justice.
@chanzuckerberg PHX
Pinned Repositories
AllenSDK
code for reading and processing Allen Institute for Brain Science data
neuroglia
a Python machine learning library for neurophysiology data
visual_behavior_analysis
Python package for analyzing behavioral data for Brain Observatory: Visual Behavior
napari-hub
Discover, install, and share napari plugins
crcnsget
cli for downloading data from crcns.org
ipynb-deploy
deploy ipython notebook instances on a server
napari_pyclesperanto_assistant
GPU-accelerated general purpose image processing and image analysis in napari
starfish
starfish: unified pipelines for image-based transcriptomics
neuromusic's Repositories
neuromusic/crcnsget
cli for downloading data from crcns.org
neuromusic/napari_pyclesperanto_assistant
GPU-accelerated general purpose image processing and image analysis in napari
neuromusic/brainreg-napari
Automated 3D brain registration in napari with support for multiple species and atlases.
neuromusic/cellfinder-napari
Efficient cell detection in large images using cellfinder (https://brainglobe.info/cellfinder) in napari
neuromusic/cellpose-napari
napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
neuromusic/cookiecutter-napari-plugin
Cookiecutter for napari plugins
neuromusic/docs
The open-source repo for docs.github.com
neuromusic/elastix_napari
A napari plugin for itk-elastix
neuromusic/meeting-notes
Notes from weekly napari meetings
neuromusic/napari
Napari PyQt5 and VisPy based GUI plugin
neuromusic/napari-allencell-segmenter
A plugin that enables image segmentation provided by Allen Institute for Cell Science
neuromusic/napari-btrack-reader
Napari plugin to load btrack files
neuromusic/napari-hub-collections
collections of plugins for the napari hub
neuromusic/napari-imc
Imaging Mass Cytometry (IMC) file type support for napari
neuromusic/napari-mri
neuromusic/napari-ndtiffs
A napari plugin to load & deskew folders of lattice light sheet TIFFs
neuromusic/napari-ome-zarr
A reader for zarr backed OME-NGFF images
neuromusic/napari-plugin-devtools
A repo with tools and services for napari plugin developers
neuromusic/napari-spacetx-explorer
A simple plugin for an interactive visualization of spatial omics data.
neuromusic/napari-sphinx-theme
neuromusic/napari-tracks-reader
napari reader plugin for tracking
neuromusic/napari-yapic-prediction
Image segmentation prediction tool that uses trained YAPiC model and performs image segmentation directly in Napari.
neuromusic/open-sauced-goals
neuromusic/open-science
curated links and customized materials to support biomedical researchers in implementing open science approaches
neuromusic/PartSeg
Tool for segmentation in bioimaging
neuromusic/PlatyMatch
Accepted at BioImage Computing Workshop in ECCV, 2020
neuromusic/rst-napari
Code for finding ontology term matches in Napari plugin descriptions
neuromusic/slackin
Public Slack organizations made easy
neuromusic/spiketools
Tools for analyzing spiking data.
neuromusic/waver
Wave simulations