AllenInstitute/AllenSDK

Issues

• pip install not working

  #2747 opened 3 months ago by bmidler
  1

• Missing links to model example .tgz files

  #2749 opened 3 months ago by campagnola
  0

• automatic retrival of connections data

  #2748 opened 3 months ago by Ahuitzol99
  0

• Cannot install AllenSDK on Windows

  #2746 opened 4 months ago by MatteoCarandini
  0

• incorrect values for `imaging_depth` column in VisualBehaviorOphysProjectCache ophys_experiment_table

  #2745 opened 4 months ago by matchings
  2

• Error: pg_config executable not found. - Installing on Compute Canada

  #2725 opened 6 months ago by AngCamp
  2

• The link to the latest source documentation is broken (google chrome, windows 11)

  #2736 opened 6 months ago by AngCamp
  1

• Does the Allen_sdk require openssl to be 3.1.4 or can it use a newer version as well?

  #2737 opened 6 months ago by AngCamp
  0

• FIlenote FOUnd error for LFP data

  #2741 opened 6 months ago by AngCamp
  2

• Python 3.12 support

  #2744 opened 6 months ago by adamltyson
  0

• Retrieving Shuffled Frame IDs

  #2743 opened 8 months ago by isabelgaron
  0

• Unable to download cache files

  #2742 opened 10 months ago by VictorSeven
  0

• Creating drifting gratings (frame by frame)

  #2739 opened a year ago by SalvoCalcagno
  0

• Broken .get_performance_metrics() method in VisualBehaviorNeuropixelsProjectCache.from_s3_cache(cache_dir=neuropixel_dataset_behavior)

  #2733 opened a year ago by RobertoDF
  2

• Missing channels in LFP data, also is the LFP pre-scaled?

  #2732 opened a year ago by AngCamp
  1

• Jupyter notebook instance to access data on AWS gets stuck and fails during creation

  #2688 opened a year ago by atleer
  2

• incorrect task parameter value in session metadata for TRAINING_0 and TRAINING_1

  #2717 opened a year ago by matchings
  1

• Update conda-forge package

  #2727 opened a year ago by dyf
  2

• Cannot load both VisualCoding and VisualBehavior caches in the same Jupyter Notebook

  #2718 opened a year ago by EricKenjiLee
  1

• DriftingGratings.get_response() does not explain what the ncells+1'th response corresponds to

  #2719 opened a year ago by HDictus
  0

• Simultaneously importing `ecephys_project_cache` and `behavior_ecephys_session` breaks nwb file reading

  #2713 opened a year ago by brendanjohnharris
  3

• KeyError: 'sweeps_by_type'

  #2711 opened a year ago by win2dvp21
  0

• datasets diffrences

  #2677 opened 2 years ago by alih100011
  1

• Flawed primary injection structure logic

  #2685 opened a year ago by lydiang
  1

• How to access Neuropixels session end time?

  #2709 opened a year ago by slcalgin
  0

• pip install allensdk fails in new Conda environment

  #2687 opened a year ago by Jballbe
  15

• `hdmf` requirement is not compatible with latest `pynwb`

  #2706 opened a year ago by jsiegle
  0

• Issue with statsmodels in allensdk install

  #2705 opened a year ago by ajuavinett
  1

• how can I get the brain surface dorsal-ventral ccf coordinates for different probes?

  #2702 opened a year ago by QingqingJZhang
  0

• Add 'quality' column to VBN units metadata table

  #2696 opened a year ago by corbennett
  1

• Request (Allen Brain Observatory Data): Access to ophys metadata as csv files

  #2694 opened a year ago by ehennestad
  0

• Error reading NWB file while session cache is instantiated in workspace

  #2693 opened a year ago by slcalgin
  0

• brain observatory pupil size data

  #2690 opened a year ago by mohamadamin-fjz
  1

• Ophys NWB Conversion fails if a dff file is missing

  #2683 opened 2 years ago by Ahad-Allen
  9

• Flipped running polarity for VBN behavior only sessions

  #2661 opened 2 years ago by corbennett
  13

• JSONDecodeError when running oapi.get_structures_with_sets([1])

  #2684 opened 2 years ago by pderdeyn
  1

• X,Y coordinate flip in receptive_field_mapping.fit_2d_gaussian

  #2655 opened 2 years ago by michaheilbron
  0

• Error-when using session.stimulus_presentations #2637 not solved

  #2654 opened 2 years ago by mariakesa
  1

• add_lfp_to_nwb Function seems to add the LFP probe data twice

  #2681 opened 2 years ago by Ahad-Allen
  0

• Optogenetic information in NWB files could be using a more specific data type

  #2680 opened 2 years ago by Ahad-Allen
  0

• extract event trace

  #2676 opened 2 years ago by alih100011
  0

• Slow loading of Visual Behaviour Npixels data

  #2657 opened 2 years ago by seankmartin
  2

• Using imread for Ophys Projections automatically casts them to floats

  #2672 opened 2 years ago by Ahad-Allen
  0

• Color annotations for Allen Mouse Brain Atlas

  #2666 opened 2 years ago by mariakesa
  2

• Reproduce VBO functional clustering results

  #2656 opened 2 years ago by matchings
  1

• Can't download experiment files from Neuropixels Brain Observatory

  #2653 opened 2 years ago by mariakesa
  2

• Violation of SWC spec in at least three files

  #2651 opened 2 years ago by patrick-nicodemus
  1

• Backward compatibility between allensdk 2.13.5 and 2.14.1 broken for VBN manifest 0.3.0

  #2646 opened 2 years ago by corbennett
  0

• Add is_sham_change to VBN stimulus_presentations table

  #2643 opened 2 years ago by corbennett
  2

• VBN NWB files need to be updated to reflect LFP data release

  #2641 opened 2 years ago by corbennett
  0