AllenInstitute/visual_behavior_analysis

Issues

• Visual Behavior paper controls

  #842 opened 5 months ago by yavorska-iryna
  2

• Paper revisions collaboration with Marina

  #840 opened 5 months ago by yavorska-iryna
  1

• calls to visual_behavior.database only work with specific pymongo versions

  #821 opened 2 years ago by saakethmm
  1

• Circular import problem

  #831 opened 2 years ago by alexpiet
  0

• Path issues

  #829 opened 2 years ago by alexpiet
  0

• Remove sessions that have been flagged for removal

  #794 opened 2 years ago by alexpiet
  2

• parsing MESO microscope settings is missing (EG PMT settings)

  #826 opened 2 years ago by mattjdavis
  0

• update dependencies

  #822 opened 2 years ago by matchings
  1

• 8 behavior session NWBs are missing from the platform_paper_cache and do not download properly from AWS

  #824 opened 2 years ago by matchings
  0

• esp.rewards_each_flash and esp.licks_each_flash are incorrect

  #818 opened 2 years ago by alexpiet
  3

• ophys.dataset.stimulus_processing functions are outdated

  #819 opened 2 years ago by alexpiet
  1

• Annotate bouts on stimulus_presentations table

  #727 opened 2 years ago by alexpiet
  2

• 'engagement_state' all being 'engaged'

  #815 opened 2 years ago by jkim0731
  0

• computation of fano factor is incorrect

  #806 opened 2 years ago by alexpiet
  0

• Circular imports

  #808 opened 3 years ago by alexpiet
  1

• CircleCI tests failing

  #810 opened 3 years ago by alexpiet
  1

• visual_behavior_data MongoDB problems

  #805 opened 3 years ago by alexpiet
  1

• extended_stimulus_presentations reward_rate calculation is incorrect

  #759 opened 3 years ago by alexpiet
  9

• ophys.response_analysis.cell_metrics throws a PerformanceWarning

  #802 opened 3 years ago by alexpiet
  0

• Cell metrics upgrades

  #792 opened 3 years ago by alexpiet
  3

• Event filtering doesnt take into account sampling rate

  #698 opened 3 years ago by alexpiet
  1

• Event Oscillations

  #697 opened 3 years ago by alexpiet
  6

• Three experiments crash when data is loaded

  #787 opened 3 years ago by alexpiet
  2

• add ISI and ephys to id_types

  #780 opened 3 years ago by dougollerenshaw
  4

• Update SDK dependency to 2.11.2

  #773 opened 3 years ago by dougollerenshaw
  0

• Add tests for python 3.8

  #774 opened 3 years ago by dougollerenshaw
  0

• Readme installation instructions out-of-date

  #769 opened 3 years ago by seanmcculloch
  0

• AttributeError: 'BehaviorSession' object has no attribute 'get_behavior_session_id'

  #771 opened 3 years ago by dougollerenshaw
  1

• `key_error` on `loading.get_filtered_ophys_experiment_table`

  #757 opened 3 years ago by dougollerenshaw
  1

• AttributeError: 'VisualBehaviorOphysProjectCache' object has no attribute 'get_experiment_table'

  #747 opened 4 years ago by dougollerenshaw
  4

• cannot query specimen driver line: can't adapt type 'numpy.int64'

  #750 opened 4 years ago by dougollerenshaw
  1

• Sync photodiode error needs to be fixed printed 4x per session

  #751 opened 4 years ago by dougollerenshaw
  1

• add engagement state to trials df

  #735 opened 4 years ago by farznaj
  1

• KeyError: 'LabTracks_ID' when calling session.metadata

  #732 opened 4 years ago by dougollerenshaw
  4

• experiment fails to load

  #677 opened 4 years ago by alexpiet
  2

• KeyError: 'ophys_experiment_id'

  #684 opened 4 years ago by yavorska-iryna
  9

• circular import in data_access.reformat

  #730 opened 4 years ago by dougollerenshaw
  5

• major refactor of AllenSDK 2.4.0

  #696 opened 4 years ago by dougollerenshaw
  5

• Create lick annotation function

  #720 opened 4 years ago by alexpiet
  2

• get filtered_behavior_session_table has wrong session_type information

  #723 opened 4 years ago by alexpiet
  4

• get_filtered_behavior_session_table has bad session_types

  #722 opened 4 years ago by alexpiet
  0

• mismatch in event timestamp length

  #700 opened 4 years ago by dougollerenshaw
  15

• event file gets loaded way too much

  #695 opened 4 years ago by alexpiet
  6

• 'session_type' missing for some sessions in cache.behavior_session_table

  #687 opened 4 years ago by dougollerenshaw
  3

• Attribute error when loading ResponseAnalysis object

  #680 opened 4 years ago by dougollerenshaw
  5

• issues with outliers in VIP experiments

  #676 opened 4 years ago by yavorska-iryna
  0

• visual_behavior.data_access.loading.get_filtered_ophys_session_table is failing

  #669 opened 4 years ago by dougollerenshaw
  7

• importing data_access.loading fails if LIMS credentials aren't set

  #672 opened 4 years ago by dougollerenshaw
  1

• visual_behavior.data_access.loading.get_sdk_segmentation_mask_image looks to be buggy...

  #664 opened 4 years ago by njmei
  2

• SDK get_params() function is broken because of VBA

  #660 opened 4 years ago by alexpiet
  1