seanmcculloch

AllenSDK

code for reading and processing Allen Institute for Brain Science data

brain_observatory_qc

mindscope_utilities

Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program

visual_behavior_analysis

Python package for analyzing behavioral data for Brain Observatory: Visual Behavior

aind-data-schema

A library that defines AIND data schema and validates JSON.

AllenSDK

code for reading and processing Allen Institute for Brain Science data

bigstream

Tools for distributed alignment of massive images

ClusterWrap

Wrappers around dask-jobqueue functions for specific clusters

fishspot

tools for finding discrete bright spots in images (for multiplexed FISH, includes background subtraction, deconv, and blob detection)

visual_behavior_analysis

Python package for analyzing behavioral data for Brain Observatory: Visual Behavior

seanmcculloch/AllenSDK

code for reading and processing Allen Institute for Brain Science data

seanmcculloch/bigstream

Tools for distributed alignment of massive images

seanmcculloch/ClusterWrap

Wrappers around dask-jobqueue functions for specific clusters

seanmcculloch/fishspot

tools for finding discrete bright spots in images (for multiplexed FISH, includes background subtraction, deconv, and blob detection)

seanmcculloch/visual_behavior_analysis

Python package for analyzing behavioral data for Brain Observatory: Visual Behavior