farznaj

visual_behavior_analysis

Python package for analyzing behavioral data for Brain Observatory: Visual Behavior

continuous_time_ca_sampler

The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.

ca_source_extraction

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

continuous_time_ca_sampler

The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.

imaging_decisionMaking_exc_inh

Codes for my postdoc project: imaging excitatory and inhibitory neurons in mouse parietal cortex during decision-making

multiscope_fn

Codes used for the analysis of Allen Institute Multiscope data used in this paper: https://www.biorxiv.org/content/10.1101/2020.10.06.328294v2

najafi-2018-nwb

Conversion of Churchland's dataset to NWB 2.0 format

swdb_2021

CaImAn-MATLAB

Complete Matlab pipeline for large scale calcium imaging data analysis

behavior

farznaj/imaging_decisionMaking_exc_inh

Codes for my postdoc project: imaging excitatory and inhibitory neurons in mouse parietal cortex during decision-making

farznaj/multiscope_fn

Codes used for the analysis of Allen Institute Multiscope data used in this paper: https://www.biorxiv.org/content/10.1101/2020.10.06.328294v2

farznaj/ca_source_extraction

Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.

farznaj/continuous_time_ca_sampler

The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.

farznaj/najafi-2018-nwb

Conversion of Churchland's dataset to NWB 2.0 format

farznaj/swdb_2021