tseemann opened this issue 4 months ago · 3 comments
It is unclear if this pipeline will work on any organism assembly?
Is it haploid genomes only? Is it especially for bacteria?
Hi @tseemann
At Plant&Food we have been using the pipeline to QC genomes of plants, animals, and fungi. It was also tested with a bacterial genome.
We have also used it on diploid genomes. The two haplotypes can be processed in parallel by inputting them as two fasta files.
fasta